RNA id: TU93863


Basic Information

Item Value
RNA id TU93863
length 544
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G70094
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2643873 ~ 2644416 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttgtgatggttaaggttagggtaaggggctagggaatgcattatgtcaatgatgggtccccacaaagatagtgccatgcactacactcacctaaaggattattaggaacaccatactaataccgtgtttgaccctatcctatcaacatttctaaagaatgcttccagcaccttgttgaatcaatgacacaaagaatgaaggcagttctgaaggcgaaagggatcccccacaccattacacccccaccaccaccagcctgcacagtggtataaggcatgacggatccatgttctcattctgtttacgccaaattctgactctaccatctgaatgtctcaacagaaattgagactcatcagaccaggcaacatttttacagtctttaactgaccaattttggtgagctcgtgcaaattgtagcctcattttcctatttttagtggagatgagtggtccccggtggggtcttctgctggtgtagcccatccacctcaaggttgtgcgtgttgtggcttcacaaatgctttgctgcatacctcggtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93861 lncRNA downstream 5585 2638062 ~ 2638288 (-) True G70092
TU93846 lncRNA downstream 32069 2610352 ~ 2611804 (-) True G70081
TU93857 lncRNA downstream 34975 2608242 ~ 2608898 (-) False G70090
TU93858 lncRNA downstream 34975 2608242 ~ 2608898 (-) True G70090
TU93739 lncRNA downstream 515132 2128471 ~ 2128741 (-) True G69995
TU93952 lncRNA upstream 82752 2727168 ~ 2735236 (-) False usp45
TU93954 lncRNA upstream 89533 2733949 ~ 2735724 (-) True G70155
TU93958 lncRNA upstream 95903 2740319 ~ 2750986 (-) True G70156
TU93956 lncRNA upstream 97509 2741925 ~ 2753247 (-) False G70156
TU93957 lncRNA upstream 105472 2749888 ~ 2753268 (-) False G70156
XM_039806798.1 mRNA downstream 8215 2613872 ~ 2635658 (-) False fbxl4
XM_039806795.1 mRNA downstream 8298 2613872 ~ 2635575 (-) False fbxl4
XM_039806799.1 mRNA downstream 8717 2613872 ~ 2635156 (-) True fbxl4
XM_039805147.1 mRNA downstream 324468 2294541 ~ 2319405 (-) False mms22l
XM_039805146.1 mRNA downstream 325301 2294541 ~ 2318572 (-) True mms22l
XM_039805963.1 mRNA upstream 17480 2661896 ~ 2692862 (-) True faxcb
XM_039805962.1 mRNA upstream 17480 2661896 ~ 2689985 (-) False faxcb
XM_039805961.1 mRNA upstream 20883 2665299 ~ 2692862 (-) False faxcb
XM_039805964.1 mRNA upstream 48583 2692999 ~ 2712717 (-) True coq3
XM_039805966.1 mRNA upstream 69027 2713443 ~ 2721790 (-) True pnisr
TU93283 other downstream 1911125 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 2615190 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 2615547 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 2616556 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 2617243 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 984717 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 1334895 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 1427908 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 1427908 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 1427908 4072324 ~ 4077779 (-) True eny2

Expression Profile