RNA id: TU93952


Basic Information

Item Value
RNA id TU93952
length 4295
lncRNA type sense_over
GC content 0.40
exon number 2
gene id usp45
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2727168 ~ 2818027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccatctaaggtagagtcttgtgtgaggtatcattgaactcagcagagacttccttcttcattggtgatggtttgtcccgccccctatgcattagccacgccccttttcacagctaatgaaccgtatgacgtagagtcttgtgtgaggtatcgttgaactcggcggggagttcccttttcattggtgacaatttgcagtgtctgagtgccgcgcaaatgtacggtcgcaaggagcggagtCCGCCGGTAACACCGACGCGCGCCGAaccgcgagggcccgtccatcactgctcgcagctttaatttataaaatattttttttatatattatatataatatatataaaaaagtatttGAAGAAAAAATGACATAGTAAAGTGACAGTTGTGTGAGTAATAGCAGCAGTTAACAAGTCTATGTCAACAGTTTAGACCAGACTAATATATGGTATGATTATGTTGCGTTTgtcttaatataatataatataatgcaaGAGTCAATGTAACATATTAACATAATGGGAAGAAGAACTGGAAGGCCAGAAGTGTAGAATGTGAATAGGAATGGCACCAGAGGTGCACCAGTGTTGCTAATCAGAACTTCAGAGGCATAACCATCCACTCCGACATAGTGATGCCGACCAGTGAGGTAGTCTATACTCCACAATGCAGTGTCGGGGTGCAGTTGAATCCCTAGAAGCTTATCCCTTAACTGGACTGGAGTACCGAACAAGAGATGGAGCATGCACAGTTGGCACGCTTGCTATGGGTACAGTCCGTCCCAAATTATGGGCTCCACACATACGTCAACATAGGGGTCTGTGCGGACCCTCTCAAACACGAGGGTGCGGAAACAGTCCCTCAATCTTCTCCTTGTAGCTGTTCTTGGCCTCTCAGTTTTCTCTTTAAATTCTTTTGACAGCCTTCGCATTGAAGGCCCTCTTCTTTTTGTTGAGAAGGCTTTTCATCTAATTGTTAATCCAGGGTTTGTTATTGGGGAAGCAGTGAACCTTTTTGGATGGGACAGTGGTGTCCTCAGAGAAATGGAGTCCGTTATGCAATGAGAGAGACCCTCAATAGCATCCCCATAGTCCTCCAGGAGCAGTTCCCAATCTGGACATGGAAACACTCTGGAGGGTTTCCTCAGTGTCCTCGGACCAGACCTTCACAGTCGTTGTTTCATCCATCTTGTTGGCGAGGGACTTTACCTTCCCCGTAATGATCGATGGAAAGAAAAGGTTTAATTGTTCTTTCCTTCTCTAACTTCTCTCTGACTTTCACACCCATTCTCCTGCCACGGCAATAGTGCCTCCATATCTCCTCCGGTAAATACACTGAAGGAACTCCATGGCGGTATTCCAGGAGCTCGTTGCGGGTCTATGTAACCATGGTACTCCAAACTTATGCAAATTAATAGTTTTGTACTATGCAAACCCCACTGTATAAAGTGCTCGAGATACATGCTCAGAAAGTACGAGTACAGCCAGTGCAGTATCTTAGCCAAATCACTCTGTTTGTATTTACCTAATTTAGTAATGAAGTGCACAGATTTGCATCATTATAGTTTTATTATAATATCAAGATAAGGGACGAACATTTATATAAGCTTATTAGCCTATTAGCTATTTAGGAAATCTAAATGACTTCTAAATGAATTTTACAAACGCTAAACTAGTTTATGGACAGGAAGTCACATGTCGCTTCCCACATGGCTGTTTGTATTTTATAACAAACATGTTGAGAGACAAATCTGGACGCTCATGACTGACACCTTTGAAACACACGCAATCATACTTGTCTATAGACCAATGTTACAACCCGTCTAGGGTAAAAGGGGCGCTTCTCCACATATCTGTACACTGAACAAGATTGTTTACCCACACTGGCCTTTAGtcagacttaaaaaaataacagaagaCCACTACCAAAGAGttagtgccttttttttttaaatgtatctttAATGACGTCACGGCCACAAGACAAATACAAAACCACATAGCAGcttatttctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcaggtgccaGGGATGCCGGCAGCAGCTTCCAGGGCCAGTGGGTGTACATCAGTGATACCACTGTTCAGATGGTACCAGAGTCAAGGGTACTCAACTCTCAGGCATACCTGCTCTTCTACGAGGAGCTGCTGTAATGTGTCTAGCAGACATATTTTTTTCTCTAGATCTCCGTTTTGCTTCCTATTGTTTTTGATACATGCCTGTACTACTCCTCATGCTCTATCTGTTACTAAGTGGGGGGAAGAAAAGGGAAAGACTTCCCTGTACGCTCACTTTTCTTACTAGAGGAATAACTATCGTTTGCATACAAATTCTCAAATAAAATTGGCACCTCTGAATATCTTAGATATAAAAGATGAACATCAGATGTTAAAGTTATTATTTTCTGATAATTCATGTTTTAAAAATCCTACCCTTTAAGAAGAGTTCGGGAGAAAATAGTGTAACTGAACCTGAGCTGTTTTAAGTTTAATGTCTGTCACGATGACATGCCTGAGGTATCTGCATGAAGGAGTTTTCTACAGTAACTACAGGAAGTAAGCAGAGTTATTGCATGCTAAACTGCGCTCAGCACTGACAAGTTGATGTcaagtgtgtatgtatgtacacatacacacatgtatgagtgagtgaatgagtgagtgacAGGAGAATGTAGATTTTAGGTGCTATGTGTATCATTTTCACATCGTAAAAGCATTACCACAATAAAATGAGTTAGTATTATAGTCAGTGTAATTAACGTAAACCCTCATGAAGATTGGCTCCTCTGTCTGCATTCTACACAGAATATTTTTCATTGTgtggcactggctcagatttgTTCCGATGTGTGCTTGATTGTTTCTGGCAATGGCAGATTATAGATGGTAAGAAATGCCAAGAGAAAAATGAATTCAGacatgtttgttcttttcagtAAAGAGATTGATGCATGAGGACAAGTAGCAATATCATTCGTGACAGAGTTTATGGGAAATATGGGCGTTCATTTGAGAAACTCAAGCACTAATAATACAGCAGTGCACCAATGGTGTTAAATAGTGGCTGGTAATTGCCTCAGCCTTTGCCCTCTTTATTTATGTTACTGATGATAACCAAGCTATCTCAGCTAATTGTAGTTTACATTGACATAGTGGTTTAAATTGTTACACATAGCACCTTTAAAGAACAGCACAACAGTTATGTTACAGCCTCCTttgaacatatttttattttattttttacatcagaatgtaaaaatgtaagaCTATCAGTGAATTACATTTGCCAAAGACAAGTTTTGCAACTGCAAGTCAGAGCAGAAAATCCCAACCAAACACACGAGGAGTTTACTTACAGTTTCTTTAACATTTGTTCTTTCAAGGCCGTCAGTATGGTTCTCGAGTGTTGTTGCACAAACAAACCTACTCGATGTTTATCAGACTAACAAAGCACCATGTCTGCCTTTTGTTGTATTTCAGCTCTACTGCAACTGTGTAGGCGCACTCACAAACCCATTAAGATGTTCAACAAAAAGTCAGCGCTGTGAATATCCCTTATACGATCAGTAAGGTTGACCAAAACAGTACTATAACAAAGAAGCAAACTCGAGGCTTTAAGCCGGACTAGAAGAAAACCGTCTTTGCTGTAATGTGCATGGGTTAATGTTCCAATGAATGTATTGCCTATTCTTGAAATGTCTGTCAAATGAGCTGTTCATCTTTTTCTATGAAAATATTTTAGATGAAAACATTGTTCTTGGTTGTTGGGCCATTTGCCACAACAGTAGAAGGGAAAGGGTTGGACAAGTGCATCAGAATCTAGAggttgattatttttattttcaaacgagGACAAATTCAGTGCTTATGCTTCAGGTTTAGGAAACCGGTGCAtggtgaaatgaaaaaaaaacatatgcatAGTCAAATGCAAAGAGGGATATTTGTGACAGACCGTATTTATGTACAGTAGAAGTTACTGTAAGGAAAAATAATGAGTATATGTAATTGTACATACTAGAAACAACACAAAATCATGGTGCTTAAGGCGTGCAGGGTTTAATGTTCAAGACGGCTTTTTGTTTCCAGAaaatcatttaatttcatttataaaaaaaagagaaaacattgAAATGAGTATACCTACAAActgtatcaaaataaaactaatttatgAACTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93863 lncRNA downstream 82752 2643873 ~ 2644416 (-) True G70094
TU93861 lncRNA downstream 88880 2638062 ~ 2638288 (-) True G70092
TU93846 lncRNA downstream 115364 2610352 ~ 2611804 (-) True G70081
TU93857 lncRNA downstream 118270 2608242 ~ 2608898 (-) False G70090
TU93858 lncRNA downstream 118270 2608242 ~ 2608898 (-) True G70090
TU93958 lncRNA upstream 5083 2740319 ~ 2750986 (-) True G70156
TU93956 lncRNA upstream 6689 2741925 ~ 2753247 (-) False G70156
TU93957 lncRNA upstream 14652 2749888 ~ 2753268 (-) False G70156
TU94079 lncRNA upstream 181221 2916457 ~ 2916861 (-) True G70250
TU94082 lncRNA upstream 198481 2933717 ~ 2934064 (-) True G70253
XM_039805966.1 mRNA downstream 5378 2713443 ~ 2721790 (-) True pnisr
XM_039805964.1 mRNA downstream 14451 2692999 ~ 2712717 (-) True coq3
XM_039805963.1 mRNA downstream 34306 2661896 ~ 2692862 (-) True faxcb
XM_039805961.1 mRNA downstream 34306 2665299 ~ 2692862 (-) False faxcb
XM_039805962.1 mRNA downstream 37183 2661896 ~ 2689985 (-) False faxcb
XM_039805555.1 mRNA upstream 207490 2942726 ~ 3121115 (-) False me1
XM_039805556.1 mRNA upstream 207490 2942726 ~ 3101476 (-) False me1
XM_039805560.1 mRNA upstream 207490 2942726 ~ 3101366 (-) False me1
XM_039805557.1 mRNA upstream 207490 2942726 ~ 3101341 (-) False me1
XM_039805559.1 mRNA upstream 207490 2942726 ~ 3044952 (-) True me1
TU93283 other downstream 1994420 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 2698485 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 2698842 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 2699851 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 2700538 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 893897 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 1244075 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 1337088 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 1337088 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 1337088 4072324 ~ 4077779 (-) True eny2

Expression Profile