RNA id: TU94078


Basic Information

Item Value
RNA id TU94078
length 1197
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G70249
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 2940922 ~ 2942118 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTTCCAAACTGGGCCTTACAAAGGACTTAACAAGTTAACCGAGTCCAACTCGGGCCTCTCAGAGGACTTATACTTTAACTCTTTTTCTGTTGCAACACAGGTTCAAAACCAGGCCTCCCAGAGGACTTATAAATTAACGATTATTGAATGAAAGACAACATCAAAAataaaggtcttcagccttgatttgaaagaactgagagttgttgcggacctgcagttttctgggagtttgttccagatatgtggagcataaaaactgaacgctgcttccctctgtttagttctgactctggggacagaaagcagacctgtcccagacgatcttagaggtctgggtggttcgTAATGTattagcagatcagaaatgtattttggctctaaaccgtttagtgatttataaaccagcaaacgttttttttaaatcaattctttgaggcactggaagccagtgtaaagacttcagaaatggagtgatgtgatccactttcttggtcttagtgaggactcgagcagcagcgttctgaatcagctgcagctgtctgattgatttttagggagacctgtaaagacaccgttgcagtagtcaagtctattgaagataaaagcatggacaagtttttccaaatcctgctcagacataagtcctttaacccttgatatattcttaaggtggtaataggctgactttgtaattgtattaatgtggctgttgaaaaacacccagcgtatttccttggagaacgttggcaccaagatcctggttgcagctgtcgctgtggccctgctgcactccctgctaagctctgcggtgccctgcaatgtcatgctgcgtcctgctgaaccctgctacttcctgctacgtccatccatgctctgctgggccacgctacatcctgtaacgccctgcagcgcactgatatgacatgaactactacgactaccatttgaagtcactgttccattattaatgactattattgccactgttcatcacagctccaaccggccccgtcagacacctcctaccaagagcctgggtctgtccgaggtttcttcccaagagggagtttttcctcgccactgtcgcactgcttgctcttgagggaattactgtaattgttggggctttgtaaattatagagtgtggtctagacctactctatctgtaaagtgtctcgagataactcgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94082 lncRNA downstream 6858 2933717 ~ 2934064 (-) True G70253
TU94079 lncRNA downstream 24061 2916457 ~ 2916861 (-) True G70250
TU93957 lncRNA downstream 187654 2749888 ~ 2753268 (-) False G70156
TU93956 lncRNA downstream 187675 2741925 ~ 2753247 (-) False G70156
TU93958 lncRNA downstream 189936 2740319 ~ 2750986 (-) True G70156
TU94101 lncRNA upstream 186149 3128267 ~ 3128634 (-) True G70265
TU94092 lncRNA upstream 228211 3170329 ~ 3172511 (-) True G70262
TU94209 lncRNA upstream 494569 3436687 ~ 3436920 (-) True G70352
TU94201 lncRNA upstream 495857 3437975 ~ 3438216 (-) True G70344
TU94215 lncRNA upstream 512054 3454172 ~ 3454938 (-) True G70358
XM_039805969.1 mRNA downstream 122895 2727168 ~ 2818027 (-) False usp45
XM_039805970.1 mRNA downstream 122895 2727168 ~ 2818027 (-) False usp45
XM_039805967.1 mRNA downstream 122895 2727168 ~ 2818027 (-) True usp45
XM_039805968.1 mRNA downstream 125680 2727168 ~ 2815242 (-) False usp45
XM_039805966.1 mRNA downstream 219132 2713443 ~ 2721790 (-) True pnisr
XM_039805555.1 mRNA upstream 608 2942726 ~ 3121115 (-) False me1
XM_039805556.1 mRNA upstream 608 2942726 ~ 3101476 (-) False me1
XM_039805560.1 mRNA upstream 608 2942726 ~ 3101366 (-) False me1
XM_039805557.1 mRNA upstream 608 2942726 ~ 3101341 (-) False me1
XM_039805559.1 mRNA upstream 608 2942726 ~ 3044952 (-) True me1
TU93283 other downstream 2208174 729924 ~ 732748 (-) False osr2
unassigned_transcript_293 other downstream 2912239 28610 ~ 28683 (-) True trnai-aau_14
unassigned_transcript_292 other downstream 2912596 28254 ~ 28326 (-) True trnar-ucg_8
unassigned_transcript_291 other downstream 2913605 27245 ~ 27317 (-) True trnar-ucg_7
unassigned_transcript_290 other downstream 2914292 26557 ~ 26630 (-) True trnai-aau_13
TU94269 other upstream 687015 3629133 ~ 3629818 (-) True G70407
XR_005639920.1 other upstream 1037193 3979311 ~ 3979414 (-) True LOC120563202
TU94368 other upstream 1130206 4072324 ~ 4077779 (-) False eny2
TU94369 other upstream 1130206 4072324 ~ 4077779 (-) False eny2
TU94370 other upstream 1130206 4072324 ~ 4077779 (-) True eny2

Expression Profile