RNA id: TU94810


Basic Information

Item Value
RNA id TU94810
length 340
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G70871
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5757650 ~ 5757989 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attggggaatgatgtttaataagtggcgtgacgaaattcaaactgtaaatataatttagttatggcgaaagtgtagctagctagctgcggtatttccccattgtaatgaatgggacatattgcaagcagctgctggtcctacaaagacgcctcacgttcataaaaatgccttaaaatcaaatcggacacaacggttagctttataagacattggggaatgatgttatataagtggcgtgacgaaattcaaactgtaaatataatttagttatggcgacagtgtagctagctagctgcggtatttccccattgtaatgaatgggacatattgcaagcagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639723.1 lncRNA upstream 39954 5717054 ~ 5717696 (+) True LOC120562254
XR_005639721.1 lncRNA upstream 48831 5707970 ~ 5708819 (+) True LOC120562251
TU94802 lncRNA upstream 48957 5708211 ~ 5708693 (+) False LOC120562251
TU94800 lncRNA upstream 81965 5675472 ~ 5675685 (+) True G70861
TU94796 lncRNA upstream 128813 5628566 ~ 5628837 (+) True G70857
TU94812 lncRNA downstream 8889 5766878 ~ 5767095 (+) True G70873
TU94828 lncRNA downstream 151377 5909366 ~ 5909585 (+) True G70887
TU94834 lncRNA downstream 176799 5934788 ~ 5935070 (+) True G70893
TU94842 lncRNA downstream 267541 6025530 ~ 6026116 (+) True G70901
TU94844 lncRNA downstream 268392 6026381 ~ 6026643 (+) True G70903
XM_039805871.1 mRNA upstream 162750 5591199 ~ 5594900 (+) True si:ch211-198c19.1
XM_039805872.1 mRNA upstream 162750 5593041 ~ 5594900 (+) False si:ch211-198c19.1
XM_039805861.1 mRNA upstream 359102 5336264 ~ 5398548 (+) False LOC120562244
XM_039805194.1 mRNA downstream 54888 5812877 ~ 5814642 (+) True LOC120561876
XM_039807192.1 mRNA downstream 878863 6636852 ~ 6805600 (+) True tsnare1
XM_039806809.1 mRNA downstream 1246615 7004604 ~ 7029761 (+) True LOC120562880
XM_039805595.1 mRNA downstream 1281174 7039163 ~ 7292435 (+) True cdk14
XM_039805596.1 mRNA downstream 1281174 7039163 ~ 7238814 (+) False cdk14
XR_005639717.1 other upstream 164601 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 339729 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 1091544 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 1644369 4113209 ~ 4113281 (+) True trnar-ucg_13
unassigned_transcript_305 other upstream 1644726 4112851 ~ 4112924 (+) True trnai-aau_22
TU94835 other downstream 202466 5960455 ~ 5960854 (+) True G70894
TU95170 other downstream 1973033 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 2363612 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 2525392 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 2525392 8283381 ~ 8309744 (+) False ano10a

Expression Profile