RNA id: TU94835


Basic Information

Item Value
RNA id TU94835
length 400
RNA type TUCP
GC content 0.49
exon number 1
gene id G70894
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 5960455 ~ 5960854 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcccgtgtaggtttgtcatttcctgaatcagctggatcatgtcaggagtgaagaaaaggtcgaaagaggatgccacatcatggattcttgatatggcatatctcgtgggctctggcatcatgccggtcggtgcttgaatgttgcgcagcgtctcagtattagatggagaccagacttgccaattcttcactgtccattcaatgttaggatggacaggatcttcagtgtcctctccactttcagaggaagggttagaggcactcacagagttggaggactccagtgaccattttgtcagactccagaaacttgtgtcatcttcagatgagtcctgcagttggctggaagataaaggctccttctctttgctccaggtctgtctccttctctagagccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94834 lncRNA upstream 25385 5934788 ~ 5935070 (+) True G70893
TU94828 lncRNA upstream 50870 5909366 ~ 5909585 (+) True G70887
TU94812 lncRNA upstream 193360 5766878 ~ 5767095 (+) True G70873
TU94810 lncRNA upstream 202466 5757650 ~ 5757989 (+) True G70871
XR_005639723.1 lncRNA upstream 242759 5717054 ~ 5717696 (+) True LOC120562254
TU94842 lncRNA downstream 64676 6025530 ~ 6026116 (+) True G70901
TU94844 lncRNA downstream 65527 6026381 ~ 6026643 (+) True G70903
TU94848 lncRNA downstream 143722 6104576 ~ 6104820 (+) True G70907
TU94850 lncRNA downstream 148742 6109596 ~ 6110041 (+) True G70909
TU94852 lncRNA downstream 151675 6112529 ~ 6112816 (+) True G70911
XM_039805194.1 mRNA upstream 145813 5812877 ~ 5814642 (+) True LOC120561876
XM_039805871.1 mRNA upstream 365555 5591199 ~ 5594900 (+) True si:ch211-198c19.1
XM_039805872.1 mRNA upstream 365555 5593041 ~ 5594900 (+) False si:ch211-198c19.1
XM_039805862.1 mRNA upstream 493365 5336214 ~ 5467090 (+) False LOC120562244
XM_039805863.1 mRNA upstream 493365 5336214 ~ 5467090 (+) False LOC120562244
XM_039807192.1 mRNA downstream 675998 6636852 ~ 6805600 (+) True tsnare1
XM_039806809.1 mRNA downstream 1043750 7004604 ~ 7029761 (+) True LOC120562880
XM_039805595.1 mRNA downstream 1078309 7039163 ~ 7292435 (+) True cdk14
XM_039805596.1 mRNA downstream 1078309 7039163 ~ 7238814 (+) False cdk14
XM_039805598.1 mRNA downstream 1124859 7085713 ~ 7292435 (+) False cdk14
XR_005639717.1 other upstream 367406 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 542534 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 1294349 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 1847174 4113209 ~ 4113281 (+) True trnar-ucg_13
unassigned_transcript_305 other upstream 1847531 4112851 ~ 4112924 (+) True trnai-aau_22
TU95170 other downstream 1770168 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 2160747 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 2322527 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 2322527 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 2788089 8748943 ~ 8751443 (+) True G71470

Expression Profile