RNA id: TU94844


Basic Information

Item Value
RNA id TU94844
length 263
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G70903
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 6026381 ~ 6026643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattaagcccgctgcagatgaaggaatacttcgacaaagtatttcctcggatcccctttgtatatcaggccaATATACTTTGTACCAGCTCGAAACTCGGCCAGCGAGATGATGCTGGTTTTCTAGTTTactagtccggactagagtgCTTCCTTTCGCGACGTGAGTCACGGTGGAAAAGCGAAGAAAGCACAAACGCCGAACGCTTTTATCGTTCccccgcctcctagtggcggggtggtgcattcaaagacccgacGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94842 lncRNA upstream 265 6025530 ~ 6026116 (+) True G70901
TU94834 lncRNA upstream 91311 5934788 ~ 5935070 (+) True G70893
TU94828 lncRNA upstream 116796 5909366 ~ 5909585 (+) True G70887
TU94812 lncRNA upstream 259286 5766878 ~ 5767095 (+) True G70873
TU94810 lncRNA upstream 268392 5757650 ~ 5757989 (+) True G70871
TU94848 lncRNA downstream 77933 6104576 ~ 6104820 (+) True G70907
TU94850 lncRNA downstream 82953 6109596 ~ 6110041 (+) True G70909
TU94852 lncRNA downstream 85886 6112529 ~ 6112816 (+) True G70911
TU94864 lncRNA downstream 152518 6179161 ~ 6179372 (+) True G70922
TU94871 lncRNA downstream 224375 6251018 ~ 6251588 (+) True G70929
XM_039805194.1 mRNA upstream 211739 5812877 ~ 5814642 (+) True LOC120561876
XM_039805871.1 mRNA upstream 431481 5591199 ~ 5594900 (+) True si:ch211-198c19.1
XM_039805872.1 mRNA upstream 431481 5593041 ~ 5594900 (+) False si:ch211-198c19.1
XM_039805865.1 mRNA upstream 627833 5396518 ~ 5398548 (+) False LOC120562244
XM_039805870.1 mRNA upstream 669087 5355807 ~ 5357294 (+) True LOC120562247
XM_039807192.1 mRNA downstream 610209 6636852 ~ 6805600 (+) True tsnare1
XM_039806809.1 mRNA downstream 977961 7004604 ~ 7029761 (+) True LOC120562880
XM_039805595.1 mRNA downstream 1012520 7039163 ~ 7292435 (+) True cdk14
XM_039805596.1 mRNA downstream 1012520 7039163 ~ 7238814 (+) False cdk14
XM_039805598.1 mRNA downstream 1059070 7085713 ~ 7292435 (+) False cdk14
TU94835 other upstream 65527 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 433332 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 608460 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 1360275 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 1913100 4113209 ~ 4113281 (+) True trnar-ucg_13
TU95170 other downstream 1704379 7731022 ~ 7801380 (+) True G71147
TU95377 other downstream 2094958 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 2256738 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 2256738 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 2722300 8748943 ~ 8751443 (+) True G71470

Expression Profile