RNA id: TU95170


Basic Information

Item Value
RNA id TU95170
length 1154
RNA type TUCP
GC content 0.55
exon number 2
gene id G71147
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 7731022 ~ 7801380 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcacgtgtgcacgtgtgtgtgcgtgttaagACTGCTCGTCTCCAGGGACCGTGAATATGAATGCGCTGATGTCAGAACTGACCGGTGTTGAGCATGAAACGCGTCCCAGCCAccacatggagaaacatgggaAAGCAtggctcctctctctttcctcttcgtcctcctcctcctcctctccaggCTTAAACAACAACCAAGTAGAACACACAACTCCTCAAacccgagagagagaaaaaaaaaaaatcaaataatattaaacaacaataataataataatattaataaaaacaaacttgtCAACAATCATTCCTTTTCCAATTACAGTCGCGTCGAAAGAAGACAACAAACTAAAAAGCAGATAAAAAGGAGAGTTTTCCCagcatcttcctcctcctgctcctcctcctctcatgcAGTACAAACTCCTTCAGCACAAAGTTTGCCTCTTTGTCTCTGAactctggctgtgtgtgtgtgtagttgtagtagttgtaGTTAAAATTGTATGGCTTTAGGGCATGGTTCAGGTTTTATCAAGAGTTGGCGGGCCCCTCGTCTGAGTCCGGCCTCCCTCTGCCCCCCGCAGCCGGGTTATTGTTGTTGGAGGCAGGGTAGTAGTCCTCAGGGGGCGGGGCTTGTGGCCCTGGGGCGGTGGGGGCCGTCCGAGTCCGGAAGGCAGACAGTCCGATTGGCAAAGCGAGGGGCAGGGAGGCGGAGCCAAACTGAGAGGCCTCCATGGAAGACACCGCCCCCAGGTGGTGCAGCCCTAGGGACACGCCCACATCCATGCTGTCACTCATCTGGGGCGAGGAGCCCTGCTGGCCCCCCCCTCCACCGATGCCCGTCTGTCCGCCCTGCCGCAGGCCACGCCCGCCGTTCCCGTGGTGGGAGtaggtggggtgggggtggtggggcGGGTCCAGGAAGTGGCGCTGGTGTTGTTGGGAGGCCGCCGGCTTGTGGAGCAGCAACTGGGTGTATGCTGGGTCCTGACCCCCACCTCCACCTTCACTGCCGGGCCACATCCTCATCTGCTGCTGGGAGGGAGCCTggtgaggacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639658.1 lncRNA upstream 70937 7656163 ~ 7660085 (+) True LOC120561796
TU95098 lncRNA upstream 163608 7567107 ~ 7567414 (+) True G71091
TU95097 lncRNA upstream 171623 7542449 ~ 7559399 (+) True G71090
XR_005639713.1 lncRNA upstream 192780 7537628 ~ 7538242 (+) True LOC120562239
TU95088 lncRNA upstream 209642 7510789 ~ 7521380 (+) True G71082
TU95205 lncRNA downstream 70137 7871517 ~ 7873393 (+) True G71176
TU95206 lncRNA downstream 70137 7871517 ~ 7875600 (+) False G71176
TU95242 lncRNA downstream 171482 7972862 ~ 7980906 (+) True G71204
TU95236 lncRNA downstream 245570 8046950 ~ 8047669 (+) True G71200
TU95237 lncRNA downstream 245570 8046950 ~ 8047586 (+) False G71200
XM_039805052.1 mRNA upstream 23431 7665238 ~ 7707591 (+) True LOC120561797
XM_039806230.1 mRNA upstream 230840 7456779 ~ 7500182 (+) True znrf2b
XM_039806231.1 mRNA upstream 247414 7456767 ~ 7483608 (+) False znrf2b
XM_039805594.1 mRNA upstream 432780 7295946 ~ 7298242 (+) True fzd1
XM_039805595.1 mRNA upstream 438587 7039163 ~ 7292435 (+) True cdk14
XM_039807228.1 mRNA downstream 84317 7885697 ~ 7904575 (+) True LOC120563115
XM_039806873.1 mRNA downstream 228302 8029682 ~ 8046678 (+) True gpd1l
XM_039804937.1 mRNA downstream 247080 8048460 ~ 8059416 (+) True tcaim
XM_039804939.1 mRNA downstream 282520 8083900 ~ 8089659 (+) True LOC120561723
XM_039804938.1 mRNA downstream 290272 8091652 ~ 8096292 (+) True LOC120561722
TU94835 other upstream 1770168 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2137973 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2313101 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 3064916 4665784 ~ 4666106 (+) True G70654
unassigned_transcript_306 other upstream 3617741 4113209 ~ 4113281 (+) True trnar-ucg_13
TU95377 other downstream 320221 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 482001 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 482001 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 947563 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 1008971 8810351 ~ 8810439 (+) True trnay-gua_1

Expression Profile