RNA id: TU95205


Basic Information

Item Value
RNA id TU95205
length 1711
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G71176
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 7871517 ~ 7875600 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAAtcataaacattttattaaaacaaagttgACAGTTAATGTCAAAAACAAACTTCCAAGCATAAATTCTGCTTTACACTTTGCCAACACAAGAGCAAGTCAGTGAAAAAGTCACCATCTATATTTGTCTGTACACACAAGGTCAAGTTTACCTCCTCACCACTAAACAGATCAGCATCAAGGGTTCCTTACCTACAAAGTGTGGGTATTGTGCAATAAGTACACACAACATTAAGACAGTATATTTGACCATACATAAGTTCTGACAGATAACTTATATACTAAAATAACTAGCCTTCTGAGGTGTGGTATGTGGGTAATAGGGATCTCCCTACCAATATGGGATTGTGCTACCTGGAATCAGAAGCAGCCTGATAAGGCAGTAAACAGAAGAGCAAATACACgtcatgaaaaaaagaaaaagacattaAGTAAGAAAGGATGAGAAGCACAGATGAGcaataaaatactgaaatgaaaGTACTGACCAAACAAAAAACCTCACTGGAGCTAAAAATCAAACCATATAGTAGTAGTTCAAACTTTCATAACTGCATAATCATATCTGTTGAAAATACTCAGGGTAGAAGGTGGCAAATGAATTCATAAAATTCCCTCACAACTCACCTAAGGCTGGGGACACGCTACACAACCCTGGACCCCTGTTGTTTCACTCTTACAGTTGATACGCATCACTTGTGCATAACCGATGTGAAATAAGGTCGGTCCAACCAGATGTGCACCTTTACATATTATAAACCTTGTACTTCTAACATGATTTGCTCCAATCTGGCAATCCACTCAGATGACGACCTGTGGCTGAAATTGCCCCAAACGTCATGTAACGTGCTCCCAACCTTACCAGTGATAGATTAGCAGGATGCTTGGTCAGTTAAGTGTCAGGGGACTAGGAAACCCAGCCAAATTTGACGCCGATTGCTCGTGATGCTTTCATGGCATGATAGGCAGGCGGCGGTGTAGAGGAGGGCAAAGGACAACACAGAGTATAAAAAGTAGATGGTGGTGAAAATGGTAATCCGTTTCCCTGAGCCTCCGCCAATACCTCATTTCTTCTGTTTAGGTGGAGGTCtgaggagagaaggaaaaggGCACATTACTACACGTATATATGAAAAAGAGCAGGCACTATATGTGGAGAGCTGACTGCAGCAGTTTGGGAGGGTCTGGATGAATGGGTCAACCTGTCACCATAACTCAACTCTGGGAACATTAGTAGGAAGGGGGAAACATCATGGAGCTCTGGAGCAGCACCATGACATTTCTTCCTGTCTGTTTACTTATTCCAAATTCACCATATTAATGTGCAACTCTGTGCCTTTTAATTGTAATCCCACACAGGTCCCTATACTCACAACCTGGGTTACCTACACTGTAGAACTAATGTGGTGGATACTTCACAAACCCAGAGTAAGTCAAAGTTATTTGAAAGAGAACACAAAAGGTGAATGGTAAAATGATTACCTAAACTGTCTGTTGTAAACATCCACCCCAGTCTAGGTGTGCTCACAGTTTAACCCTCAAAGTCAGgagtcttcaatgttttttaagccaaggaccccttaacagagagacagagcagggaccccccaacatattgtataaaatgaagttgcatattaaactgggcctacaataacgtgtcgGTGGCCTAAAGTCTTTATACATactttcaaaaaactATTTGGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95171 lncRNA upstream 69502 7796341 ~ 7802015 (+) True G71148
TU95173 lncRNA upstream 127516 7742632 ~ 7744001 (+) True G71150
XR_005639658.1 lncRNA upstream 211432 7656163 ~ 7660085 (+) True LOC120561796
TU95098 lncRNA upstream 304103 7567107 ~ 7567414 (+) True G71091
TU95097 lncRNA upstream 312118 7542449 ~ 7559399 (+) True G71090
TU95242 lncRNA downstream 99469 7972862 ~ 7980906 (+) True G71204
TU95236 lncRNA downstream 173557 8046950 ~ 8047669 (+) True G71200
TU95237 lncRNA downstream 173557 8046950 ~ 8047586 (+) False G71200
TU95238 lncRNA downstream 173579 8046972 ~ 8047586 (+) False G71200
TU95252 lncRNA downstream 175642 8049035 ~ 8059805 (+) True G71211
XM_039805059.1 mRNA upstream 88035 7767759 ~ 7783482 (+) False rbm42
XM_039805058.1 mRNA upstream 88035 7769790 ~ 7783482 (+) True rbm42
XM_039805054.1 mRNA upstream 130483 7731826 ~ 7741034 (+) True LOC120561799
XM_039805052.1 mRNA upstream 163926 7665238 ~ 7707591 (+) True LOC120561797
XM_039806230.1 mRNA upstream 371335 7456779 ~ 7500182 (+) True znrf2b
XM_039807228.1 mRNA downstream 12304 7885697 ~ 7904575 (+) True LOC120563115
XM_039806873.1 mRNA downstream 156289 8029682 ~ 8046678 (+) True gpd1l
XM_039804937.1 mRNA downstream 175067 8048460 ~ 8059416 (+) True tcaim
XM_039804939.1 mRNA downstream 210507 8083900 ~ 8089659 (+) True LOC120561723
XM_039804938.1 mRNA downstream 218259 8091652 ~ 8096292 (+) True LOC120561722
TU95170 other upstream 70137 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 1910663 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2278468 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2453596 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 3205411 4665784 ~ 4666106 (+) True G70654
TU95377 other downstream 248208 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 409988 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 409988 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 875550 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 936958 8810351 ~ 8810439 (+) True trnay-gua_1

Expression Profile