RNA id: TU95270


Basic Information

Item Value
RNA id TU95270
length 1507
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G71226
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8103284 ~ 8111425 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attcgattagcatgaaaacaaatctcaGAGAACGGTCAAagtcggtacacgtgttattaacccctagtttcattttgcgccggatttgtcctttaagtatTCATCATTGTTGTTATTTAACACTAAGTCTATTTTATGTACAAGATTGACTCAGGATAAGCTGTGGCTGCCTCTTCACTGACAAAGCTGCCCTTTCACTATGTTACTTCAAAGAATGATATTATTGCCACGCTGCAATTGTACAACCACTATTTTATACACACTAATTTTCACTACCGCTGCAACACTGCATGCATCTATTAATAACACTACATGTTTTAAAATCATGTCACGACCTGGTTATTATTTCTGAgaataatttacattttatagatGACTCTATTTCCTTAGCATACAGCAGAAATATATTCACAGTACTACATAGTTACTACTTTTATACAGACCAGTACTGAATACTATAAAATCATTCACAGTTGTATGATGTAGTTCTTCCTATTGCTAGCTAGttattcatttaaattcaattcaattttgttcatagtgtcaaatcacaacaagagttatctcaggacactgtACAgaaagagtaggtctagaccacactctatcatttacgGAGACCCAATAGTTTCCCACGAGCATgcatttggtgtgacagtggtgaggaaaaacttcctttctacaggcagaaacctcagacagaaccaggctcttggtgggcggatATCTGCCGCCGCTGGTTGGGACCAtatactgttaatattaatggattaatggacttcggcgaagtgctgcaaatgcgcaagtgccttaaacctgcattctatctgaatccCAGCAGGGGACTATGAtatgattgccagtgaaagtgtgtaatgtAACGTTGAGTGtaagggctcctccctcactcctgcCTCTCGTCttaaatcgtcacatccgcaaccaggatggctgcgacCGTAACGgaaaactcgacgactcatagcagatctccacaaaccaatcggtgacgtcacacatgctctgtccattaatattaacagtccatggttgggacacagagacactgatacagatatctGAAACTCTAATCTTCTATCATCAAATAATGCCaatcttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccgtccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccttccattcagTAGATGTGGGTCAGGATGCAATATGGCTTTTggccacacacactggctgaCATTTAGCAGGGGATAGAAGCCAGAGGGGGAACAGGTACTTTTACAGCAGCATTTTAGGGGTTGCTACAAGCCTGTggacttttttttgtgtttttagggAACTTGGACTCATTACctgagtatgttttttttttaatctggcgctggtggcattttctttatatataaTGAATCTAAAAACTGACAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95261 lncRNA upstream 40762 8068055 ~ 8069124 (+) True G71220
TU95239 lncRNA upstream 49085 8060110 ~ 8060801 (+) True G71201
TU95252 lncRNA upstream 50081 8049035 ~ 8059805 (+) True G71211
TU95237 lncRNA upstream 62300 8046950 ~ 8047586 (+) False G71200
TU95374 lncRNA downstream 16274 8127699 ~ 8152466 (+) True G71306
TU95373 lncRNA downstream 20824 8132249 ~ 8132787 (+) True G71305
TU95391 lncRNA downstream 87528 8198953 ~ 8199908 (+) True G71323
TU95393 lncRNA downstream 105252 8216677 ~ 8236718 (+) True G71325
TU95397 lncRNA downstream 116410 8227835 ~ 8310764 (+) True G71326
XM_039804941.1 mRNA upstream 521 8104864 ~ 8109365 (+) True LOC120561725
XM_039805231.1 mRNA upstream 5037 8104249 ~ 8104849 (+) True LOC120561897
XM_039804940.1 mRNA upstream 5494 8096361 ~ 8104392 (+) True LOC120561724
XM_039804938.1 mRNA upstream 13594 8091652 ~ 8096292 (+) True LOC120561722
XM_039804939.1 mRNA upstream 20227 8083900 ~ 8089659 (+) True LOC120561723
XM_039805973.1 mRNA downstream 3096 8114521 ~ 8121326 (+) True rwdd1
XM_039806766.1 mRNA downstream 75862 8187287 ~ 8198861 (+) True zgc:114181
XM_039805237.1 mRNA downstream 171955 8283380 ~ 8309523 (+) False ano10a
XM_039805236.1 mRNA downstream 171956 8283381 ~ 8308065 (+) False ano10a
XM_039806352.1 mRNA downstream 252931 8364356 ~ 8384620 (+) True pomgnt2
TU95170 other upstream 308506 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2149032 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2516837 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2691965 5336214 ~ 5417921 (+) False LOC120562244
TU94562 other upstream 3443780 4665784 ~ 4666106 (+) True G70654
TU95377 other downstream 10176 8121601 ~ 8122239 (+) True G71309
XR_005639665.1 other downstream 171956 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 171956 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 637518 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 698926 8810351 ~ 8810439 (+) True trnay-gua_1

Expression Profile