RNA id: TU95391


Basic Information

Item Value
RNA id TU95391
length 956
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G71323
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8198953 ~ 8199908 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCAGTCACGAGGTGTTTATTTACCACTCAAACATTTACTGAACACTCTTATAAGAACTCATTTCAGAGCCAAGACTGCAGATCTAGACGGACAGACGTCGCTGTACCGTCTGGACCGAATCCAGCCATTGTCTGATGTCAGAGTCCTATTCAGCCAAAAGCATCTGCTCTACTGTGTACAAGTCATTTAGTCTCATATGTAGGattcggagagagagagagagagagagagagacagagagagagagagagagaggggtatgGCATGCAGCACAGGTTTCTATTGTCTTATCCATCATACGCCGAGATGCTGACACCTATTTTACTGCGAGAACGCCAGGTGAAAATACCTCGAGCATCTGTGACGTTGCGTCGCAccatttcaaaaaaagaaaataagcttATGATGAAATTACATATTTTTGCAATGAAATGCTGGCACATTCTGTGGACACACTGGTAATAATACAAAGAAACAGTATCCACTTCCTACAGTCACAACACTTTGCAGATAGCAGTTGCAGATCATTACAGGGCTCGTCTCCACCTGTATTTCTATTGAATGGACAcatatagagagccgaagtcacgcccttctacttccggctaatgggacctatctttctaaaaaatatgaacgagagtcaagGGAGAGatgataattattttttgatcccgtttgaattgagcgatggattacaaatatgatgttcgtcaatttaaaagataatttttcaaccgaagaaagtctcagttagccgtaggtttgtcatatgaccacttagtgtgaactacatctcccgtctcacacaatctacctcaccttcgtcaatttaaaacattatttttcaaccgaagaaagtctcggTTTATTgttaagactgtgaaaatacagtacaggccaaaagtttggacacaccttctcattcaatgcttttcctttattttcatgact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95374 lncRNA upstream 46487 8127699 ~ 8152466 (+) True G71306
TU95373 lncRNA upstream 66166 8132249 ~ 8132787 (+) True G71305
TU95269 lncRNA upstream 87528 8103284 ~ 8111425 (+) False G71226
TU95270 lncRNA upstream 87528 8109886 ~ 8111425 (+) True G71226
TU95261 lncRNA upstream 129829 8068055 ~ 8069124 (+) True G71220
TU95393 lncRNA downstream 16769 8216677 ~ 8236718 (+) True G71325
TU95397 lncRNA downstream 27927 8227835 ~ 8310764 (+) True G71326
TU95399 lncRNA downstream 107685 8307593 ~ 8310764 (+) False G71326
TU95409 lncRNA downstream 111943 8311851 ~ 8314761 (+) True G71334
XR_005639714.1 lncRNA downstream 273362 8473270 ~ 8474591 (+) True LOC120562242
XM_039806766.1 mRNA upstream 92 8187287 ~ 8198861 (+) True zgc:114181
XM_039805973.1 mRNA upstream 77627 8114521 ~ 8121326 (+) True rwdd1
XM_039804941.1 mRNA upstream 89588 8104864 ~ 8109365 (+) True LOC120561725
XM_039805231.1 mRNA upstream 94104 8104249 ~ 8104849 (+) True LOC120561897
XM_039804940.1 mRNA upstream 94561 8096361 ~ 8104392 (+) True LOC120561724
XM_039805237.1 mRNA downstream 83472 8283380 ~ 8309523 (+) False ano10a
XM_039805236.1 mRNA downstream 83473 8283381 ~ 8308065 (+) False ano10a
XM_039806352.1 mRNA downstream 164448 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA downstream 166616 8366524 ~ 8384620 (+) False pomgnt2
XM_039805857.1 mRNA downstream 254856 8454764 ~ 8504452 (+) True LOC120562241
TU95377 other upstream 76714 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 397573 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2238099 5960455 ~ 5960854 (+) True G70894
XR_005639717.1 other upstream 2605904 5591199 ~ 5593049 (+) False si:ch211-198c19.1
XR_005639716.1 other upstream 2781032 5336214 ~ 5417921 (+) False LOC120562244
XR_005639665.1 other downstream 83473 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other downstream 83473 8283381 ~ 8309744 (+) False ano10a
TU95565 other downstream 549035 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 610443 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 610826 8810734 ~ 8810823 (+) True trnay-gua_2

Expression Profile