RNA id: TU95409


Basic Information

Item Value
RNA id TU95409
length 2297
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G71334
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8311851 ~ 8314761 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGACTACAGAATAATACAATGAATATTTCTGTCAGTTCaaactcttttctttttttttctttttttttttcttcttcctttttggTCCAGAAACATTTCTGTGGCTGATTCTCTCAAACACCGAAACACATGCACATGTCATTCACCTGGATACAGCTGAGTAAGACGACAGTCAAacacacctgacagcatgttgGAGCTGAGACACCCATACAGTAGGACTAATTATCATAAGGCTAGATACTGTACAGCTATGCACCAAAGGGTTCactccgagagagagagagagagagagagagcaccgTATTTACAACTCTATTTACATTTggtttgaaaaagaaaactccCACAACAACCAGAGAGAGAATAAAACACAGCTTTCTTTTCCTGTTCAGTCCCACGTGGCCGTTGTAAGGCTGCAAgtttggaattaaaaaaaattaaactaatAAAAATTGATTCTGTACATAGATAGCTGCAACACACTGTAAAGCTTATTGCCAATGCCCGAAGAGTTTCCCCATTTCCATCTTCCATCTCTTTAAAGTGGTGAACTTTCCttcctgcacgcacacacacacacacacacacacacttaaaggtgcactatgagtttctgcatggtttcagcgcaatttcattttttgtctcaaatcgtaggcatctctccttgatccgctatagctgcctgccccctgaacacaccgtgaaaaagcccggtctcgggagacaacacaggggccGTAAACgccaaacaaacactaggggcacaggctgtgcaccaaaacacaacaaaccacggttccagccaatcaccgacaagatggctgggggagggggagggggtgaGGGGTTAGCGACAGTAAAGCCCGAGACCCACCGAGCCGATCATCGGCcgtcagacagtctggcgagggtCAGTGACTCCAGACACGCCGACTTGACATGTAcaatcggcggggcgggcactgccggcagtcggactcaaatgaccatctgattggtagagtgctaacccggaaacggggagcggaatgagcgtgactagagtctctcaaaatcggacgaaaatcttttaaactgactgtCGCTGCCCAATGTGAGTCGAGCgGAAACGAAGACCGATTCGGCTTAAAAAGTTTTCAGAAAcgcgtttcggtgaactattttagtacaatatgagatcgtattctgaacgagccgccgtgaatttccagagaaaccagacccacgtgacgcgttcgtccaatcagctgccggttttcatttctgggcgacaatacagattagcgccgcctgctgctatggagacgtattacgtctcgtctcttcggtgtgttccgaggcactttcttttgaccaactcgggggagactgatcagtccgacgtTTCTGCCGAGGGGTCGGCCTGTCTGGGcagtcagttagtcatgaccGTTATGGATacatgtggtggtggtggttGGGGCCACGCCCACTTCCTCAAACAGCAGAAATGTacaagttttaaaaaataaactttactcTTCAACATCCTGTATATACAAACGCTGCACGCGTGTCGGCTACGCTGTGGTGCAGACGGACTCGAAAGAATCAGACGGAACCGACGTTCCCTAACCAGCAACGACAGCAACACAttaaaaacgataaaaaaaaaaaatcaaaaatcagAATACCTCATTTGAAATATATACGGTCAGCAGTTAACATCTCCACGCGCCGCCTTGCTACAGAGGAGTGCGCGCGCGTCGACAAACCGCCAGGTTTCGTGAGGCGGTGTGTCGCCGTCCACGTTTAAAGGGTTCCACAGATACGCTGAATCGTTgggaatcatttaaaaaaaaacaaattacaaaaatgttaaattaaaataaaattgtctGAGTGCAATATGGAGTCAAAACTAAAACCTTTCCTCTTCTGAAGAGGTCAGAgagtcctaaaaaaaaaaaaaacgtgatccACTTTCTAATCCAGCTGGCGGCTAACCGCGGAGAATCGGAGCTGCTGTGTCGACTGATGTGTCtcatatttaaagaaaaaaataaataaaagatgttcGGGAAAAATGACCACTTTGTTCCGAAGTTATTACGACTTTTGTCTCCCAAAATGTACGACTTTGTTCTCATAACGTTGACTTTCTGCTCGTAATACATCGTTGAGGTTTCCCAGCTTTACCATCGGGGTCAAAGCTTGAACTCATTCGAAGATGAAAGCAGCATTTTGTTATTAAGAGAAGTGTAAAAGATATAGCGGGTgcactcgtgtgtgtgtgtgtgtgtagggggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95397 lncRNA upstream 1087 8227835 ~ 8310764 (+) True G71326
TU95399 lncRNA upstream 1087 8307593 ~ 8310764 (+) False G71326
TU95393 lncRNA upstream 75133 8216677 ~ 8236718 (+) True G71325
TU95391 lncRNA upstream 111943 8198953 ~ 8199908 (+) True G71323
TU95374 lncRNA upstream 159385 8127699 ~ 8152466 (+) True G71306
XR_005639714.1 lncRNA downstream 158509 8473270 ~ 8474591 (+) True LOC120562242
TU95423 lncRNA downstream 192098 8506859 ~ 8514393 (+) True G71348
TU95506 lncRNA downstream 233771 8548532 ~ 8548790 (+) True G71421
TU95509 lncRNA downstream 237768 8552529 ~ 8555278 (+) True G71424
TU95517 lncRNA downstream 279272 8594033 ~ 8620339 (+) True G71429
XM_039805237.1 mRNA upstream 2328 8283380 ~ 8309523 (+) False ano10a
XM_039805236.1 mRNA upstream 3786 8283381 ~ 8308065 (+) False ano10a
XM_039806766.1 mRNA upstream 112990 8187287 ~ 8198861 (+) True zgc:114181
XM_039805973.1 mRNA upstream 190525 8114521 ~ 8121326 (+) True rwdd1
XM_039804941.1 mRNA upstream 202486 8104864 ~ 8109365 (+) True LOC120561725
XM_039806352.1 mRNA downstream 49595 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA downstream 51763 8366524 ~ 8384620 (+) False pomgnt2
XM_039805857.1 mRNA downstream 140003 8454764 ~ 8504452 (+) True LOC120562241
XM_039805233.1 mRNA downstream 445285 8760046 ~ 8774822 (+) False LOC120561899
XM_039806986.1 mRNA downstream 773423 9088184 ~ 9101502 (+) True LOC120562991
XR_005639665.1 other upstream 2107 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other upstream 2107 8283381 ~ 8309744 (+) False ano10a
TU95377 other upstream 189612 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 510471 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2350997 5960455 ~ 5960854 (+) True G70894
TU95565 other downstream 434182 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 495590 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 495973 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 496348 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 497487 8812248 ~ 8812336 (+) True trnay-gua_4

Expression Profile