RNA id: TU95509


Basic Information

Item Value
RNA id TU95509
length 2300
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G71424
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8552529 ~ 8555278 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAGTTTGAGATACGAGTCTTTACCTGTAGGGAGAAAGCAATGTAGATTGCCACTGATCCTGTTACAGTTCCAAGGCCAAGAAATGTTCCAGAGTCACTGTCAAAGACAAGGTTCAAGTTAAATTACGCAGCAAGAATTTATTGTTCTTATCCTAAGAAGTCTGATTAACCTTTTCATACAAAAAAACCTATGCTAAAGTACTTTTAAGAGAACAAAGTACAGTATATGAGACCATCCTTCCCCTACTGATGAACTGAAAAAGACTTCGGCCAGAAATTCCTTTTTTCACTTGCCTGGTCAGGTAAACACTGTGGATCAGAAATCTACTTGCCCTTCAAGGACCATACCAATGGTTTTGCACAATCAGACCGATACATCCAGTGCACTTACAACTTGCATCATAAATGACTGAAAACCAGAGAtgtggacttgagacttggTGACTTGGACTAGAGGACTGTATTGGGGGAGTGGGTGGTTTTAACAGGGGCTGCGGCTTGGAGTGGGcggtccaaaaaaaaaaaaaaaaaaaaaaaaagacagcggGTCCCAGTGCTGTAACCAATTGTTAGGTTCGCCTAGCTTGGTTTCATTAGAAAATCAGCAACGCACACGGTGCATCCAGTTAAACATCAGCCAAACGCTTTATTAACAATCCTCTACTCCCCCTCTCTCGCTTCTAACCCGGGGGCACTGTGCCCCGCCCCTTTCTCCTTGATCCAATCAACAGGGACTTTAACATGAAATCGGTTAGAGAGTGAGTTAAAAGACAGGGaaacaaaagtaaataaaacaaCCTGAGCAAAACGAAGCACAGCCAACAACACGTTCTAAAAtgagttaaataaataaagcagcaGGTAATGTTGGAACCACTGAACTAACCTATCCAAGCCATAACAAAGAGGATTAGGTAAGTTCAGgcttcaacacacaaacaatacttGTGAGTAGGATCCGttcattgttgtttttggtCTTCACTTCGGATGTGTTGTCTAAcacaaaatatagaatatcaccagacttatccttatagtgataaaaatgtattgttacaGTATTATTACCAAAACTGTATTGACACCAAATTCAGAAAAGTTTTAAATGTTACACAGCACTACTTTTTTAGTTGACCAGTTGTAAatgcaggttgttttttttaaacaataagcATTACAACTACAGTTTTATCATTTAGATCTAACCAGGAGTACTTCATATGGGCTAGGAGATACCAGCTACTGAATGAGAAAGTGTAGTTTTGACAAAGATACAAACAGCTTTTCTTTCACCTGCCGCCATGTTTACTTACTACAGGGTTAGGTAGCATCCAATTTGACTGTCAGAGAGGTGAGCATAAAAAGCCACATAAGATGTAGTAAGACTCTGAGAAGTACCCTGACTGAGCCTGGGCCATCAGGCAGTCCTGACCAAAACCCTAACTTCCTCATGTCTAGGGCTGGTCTCTCTAGCATCCATGGTTAACAAGGTATAATATAAGATCAGTAACCTGACAGCCAGACTGGAGATGACCTCGGTGCCACAGGGAGCCGTCAGCATGGGCAGAAAGCTCTTGCCGTCCCACTTGGTGAGGTAGCAAGGAGGAGGTTTTCTGTCTCGTTTATGGGGGATCTGGACAGTGTAAAGCCTCAGGGCGCCTTTTTGGTCGGCTACCTTTCCAAACCTGAAATACATGAAAATATAACCATCTATTAGTGACTGTCACATCATTCAGATAGATATGGTGATGTCAAAAGCTGGGATGCTGTTTTGTAAAACAAtaagtcaattttttttttttttttttaacctgcaaGCCATATATCGATAGGTCTTCTCAGCTACTTGAGGCATGGTTTCAAGCCATTTCAGACCCATAGCCAACTGGCTGCCACTCCATACACTGCAGGAGAAGTCCCGGCCAACAGTCACCAGGTGCTGTTCCCTGGACTCATATCCAAGTCTTCAACCTCCCCTTCATGTGCTTTAAAGTCAAACCTCTTCTTTAGCGATGGAAACTCCAGACTCGTATGTGTCCGTCTGTGCCTCCTGTCAGCAGAAGGCTCAGGTCTGGACTGAACCTGACTACTTTCTGAAGCGGGTCCACGGGGTTCAGGTCTGACTGCACTTCAGCCAAACCAGTCACCGAGATATGAGCCGTCTCATCCTTCATAGGTGAAATATCTCCAGATGCTGCAGCTTCATCCGGACCACCTTTGTCTCTTTTCCCAGCTCTTCGCCTGGCATTACCCTGCTGCACGCTGTTTTCTGCTGCACAGATGACACCAAATTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95506 lncRNA upstream 3739 8548532 ~ 8548790 (+) True G71421
TU95423 lncRNA upstream 38136 8506859 ~ 8514393 (+) True G71348
XR_005639714.1 lncRNA upstream 77938 8473270 ~ 8474591 (+) True LOC120562242
TU95409 lncRNA upstream 237768 8311851 ~ 8314761 (+) True G71334
TU95397 lncRNA upstream 241765 8227835 ~ 8310764 (+) True G71326
TU95517 lncRNA downstream 38755 8594033 ~ 8620339 (+) True G71429
XR_005639619.1 lncRNA downstream 91686 8646964 ~ 8647709 (+) True LOC120561615
TU95558 lncRNA downstream 188250 8743528 ~ 8743790 (+) True G71463
TU95571 lncRNA downstream 210616 8765894 ~ 8766134 (+) True G71476
TU95570 lncRNA downstream 213410 8768688 ~ 8769064 (+) True G71475
XM_039805857.1 mRNA upstream 48077 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 167909 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 167909 8366524 ~ 8384620 (+) False pomgnt2
XM_039805237.1 mRNA upstream 243006 8283380 ~ 8309523 (+) False ano10a
XM_039805233.1 mRNA downstream 204768 8760046 ~ 8774822 (+) False LOC120561899
XM_039806986.1 mRNA downstream 532906 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 532911 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 560433 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 572572 9127850 ~ 9144754 (+) False bves
XR_005639665.1 other upstream 242785 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other upstream 242785 8283381 ~ 8309744 (+) False ano10a
TU95377 other upstream 430290 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 751149 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2591675 5960455 ~ 5960854 (+) True G70894
TU95565 other downstream 193665 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 255073 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 255456 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 255831 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 256970 8812248 ~ 8812336 (+) True trnay-gua_4

Expression Profile