RNA id: TU95517


Basic Information

Item Value
RNA id TU95517
length 1664
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G71429
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8594033 ~ 8620339 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgtggatttAGACAAGCAGATACCCTAAGTTTAGTTAAaagggtaaaaaataaaataaaatcagcaTGTTGATCCCTACTTGTTCTGGAGAGATTCATAAACAAATATCTAAAATACAggtattatttatttagaaccctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcggagcTGTGGTTAGTGATCAGAGATGGAGTGTGATGCTGGAAGTCTGGCAGGTCCTGTAtgcataaaaagtctcagaataGGCTTAGTGATCCACCATCTGATGATCACTGCAGCACAATTTCACACTTCAATACTATCACAAACCTGTGATTTTAACATTACATTGTAAAAACGTTGGATACTTTAACCAAATGTGATGTCAACTTGGAAagttcagagaaaaaaaaaagcaacaacagcagcatatGACAAGACAGAGAGGTGACTGTAAATGTGCACATACAGATTGGTCAAAAAGAGGACGAAAAATATGTGAATCATTTGGTATGTCCTTCCCAGTCAGCAGGTGAACTGAACACTGATGGGCACCTTTACTGTGTGGGGAgggcacaacaacaacaaaaaaacaatgttttgagATTTGAAGCACTTTACATTTTTCCCAATTTGGCTTTGGTGGGAAAAAAACCACTCAAAAACTCCACCTTATTTTCAGATAGACAGAGGACTATTACACAGTACTGTGCTTGGTAATAGATGACTTCTTCACTGgctatttctgtttttctctgctCTAGGGGGCCTACATGCTTACTTTACTGTGAAAATGTCTATCATTTCTTACAGCCACTCTAATGATCTAATGAATAACTGTTGCAGataaaggttgaaaaaaaatacCACTATTACTTATCCCCTTCGCAATAAAACACCAGGCTGTTGTATGAGCTTTTATCATGATGGTACGGAATGTTAAATGGTTAATTATTAACCTAAGTAttgtattaaagtgctcatattatgttttttggctttttccctgtcctttattatgttatatatctttttttgtgcatacagcCCAAAGTCCACTCCAAAGGGACtaaccatctccaacagaaaacactgttgacgaactgctccaaacagctctgttgtagtccagcctttacttcagagacaaacctgcgtcactttgtaacacaggttatgatgctcgcctagctgctagcatggcacgccctcatactctgcttctgactggctagtagtccttacctagctattgCGCATGTGCggctcccaacaaagatggctcTCTAGCTACAACAGAGAGCTCAACTGAAAGGGTGAaatgaggagctgcagcaatgtgcagtacaacaaaaatatggtgttttttgaaaattaaaccatgtaaacctattctgatataacctctaaacacaattatgaacctgaaaatgagcataatatgagcactttaaagtcaaAATTCTTAGATCATAACAACACAAATAACAGtaagcttcttctttttctgctgTTATGAAAGATTGTATGCATACAGTACAGGAGCAGGCTGTAAGGGGGGAAACAGTGGAGTTTAGAATTTGGCAGCTTGCTGGGAGCTTCAGTCGTTGATGAGAGCCAGGATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95509 lncRNA upstream 38755 8552529 ~ 8555278 (+) True G71424
TU95506 lncRNA upstream 45243 8548532 ~ 8548790 (+) True G71421
TU95423 lncRNA upstream 79640 8506859 ~ 8514393 (+) True G71348
XR_005639714.1 lncRNA upstream 119442 8473270 ~ 8474591 (+) True LOC120562242
TU95409 lncRNA upstream 279272 8311851 ~ 8314761 (+) True G71334
XR_005639619.1 lncRNA downstream 26625 8646964 ~ 8647709 (+) True LOC120561615
TU95558 lncRNA downstream 123189 8743528 ~ 8743790 (+) True G71463
TU95571 lncRNA downstream 145555 8765894 ~ 8766134 (+) True G71476
TU95570 lncRNA downstream 148349 8768688 ~ 8769064 (+) True G71475
TU95576 lncRNA downstream 149866 8770205 ~ 8776508 (+) True LOC120561899
XM_039805857.1 mRNA upstream 89581 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 209413 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 209413 8366524 ~ 8384620 (+) False pomgnt2
XM_039805237.1 mRNA upstream 284510 8283380 ~ 8309523 (+) False ano10a
XM_039805233.1 mRNA downstream 139707 8760046 ~ 8774822 (+) False LOC120561899
XM_039806986.1 mRNA downstream 467845 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 467850 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 495372 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 507511 9127850 ~ 9144754 (+) False bves
XR_005639665.1 other upstream 284289 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other upstream 284289 8283381 ~ 8309744 (+) False ano10a
TU95377 other upstream 471794 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 792653 7731022 ~ 7801380 (+) True G71147
TU94835 other upstream 2633179 5960455 ~ 5960854 (+) True G70894
TU95565 other downstream 128604 8748943 ~ 8751443 (+) True G71470
unassigned_transcript_307 other downstream 190012 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 190395 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 190770 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 191909 8812248 ~ 8812336 (+) True trnay-gua_4

Expression Profile