RNA id: TU95576


Basic Information

Item Value
RNA id TU95576
length 2415
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC120561899
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 8760046 ~ 8776508 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACTCCACTACGATACTGGCAACTATAAGGTCTATGATGTGTTTACTGGCTCGACGATGAAGGTGTTGAACGCCACTACAGAGTTCTCCGTCTCCATCAATCCCTCAGGTGTTGTCATGTGGTACGTTTACACAGAACAACAATCCAAACAGATGGAGATACTCCACTACCAGCAAAAGAAAGCCTCACCGTTCACATTACACAAAGCTAAACCTGGGCATCATACTGTGTTATGAAGAAACGTTTgtggaaaggaaaaaaatgctaaGCTGGTATTTTATAGAATCATTTAAAAGGCGGACAGGCTCAATCAAAACCATCTCAACCCGATTTTGAATTATCATTGAACAGATATATATTCTTTTGCACTGATGTTCACCAAACCTAATattgtgttctttttttaattgtttagaGGGGCCTTTCCGttgaatttaataaaacatttgttgTCCTTTTTTAAGATGTTTGTGCCAGTAAGTAATTttgtcaaaatatatataaaattgtgaCATAATTAATACATAAATTCAGGGGAAGTAACAAttatgtagttttttttgtgtacgTATTTTGTGTACTTACACGCCGACCTGACAATCATGATAGAGACTTAgcaatagggttgggtaccgtttggatttttacgattccgatgccaaaccggtacttttaaaacaattccgattcctaaaccaattcttgaaaaactgaaaaatgacataaaagaaaggcttttttatggagtttttttttattgaaaattatttaaatttaacaatatattaacgttttaaagtacttaaatatataataagtaaacctaagtcactaacgcacaactacaataatttactttagcagttcttttgcagaaaaatgaccatatttgactgatttatggcatgtcctgcacaggagaaaactctctcagatagtgtccaagaggtctgtacacacccaggtatgagtttgaaagggcagacaatttggggaggctgtccggcgtcccccaccaccaggctacaggctcttgtcctgaacaatagactagcagagcaagtgtaatatgtttactagcgatcacctgcagtcagtgaatggttaatatgcatttacgtccgttttggtgagcccagagggaaaatatggcattttaaatgtagcctacatttacggtagctagctaacggtagactacagagaaagtgtgatgtttttacgtccgtttcggagcgtgtacaaaaagcagccatctatcagcagtgattgtagagtgcatgtcacagaatagcgcggacatgcgcttcacaccgcgagcgggcacgtgccTCCCTCTGCCGCTGTCCGGAACGACAGAGGGAAagtatttcagtcggaaccgaaatgaggaaccgaaatttgtgTTCtgatccggtccgaatactaccgtttgcataggaaccggttccatagtggaaccgggtttcggtacccaaccctacttagcAATGCTTGtccatggcactgtgtacattcaaatagatgtgaacttgtttttgggtgttgttgGGTCTGTGTTTTCATCTGTTTCATCTCTGACCCTcccactgtgtgttttcacttcattaaagttaattggaacattcTGGTCACCTAAAAATTTCCTGTTCAGCATTTTGCCAaccaggctagctagctagctactgctaCCTCTGTTATAAATATTTTAGCATGTGTGAGCACATACATCTAAGGCAGACTTTCTCAACCACTAGGCCGCGAGTACTGTCTAGTGGGCCGCAAAATATTTTCAACTTGATATTCACTTTTTGTGAGTAAAGATATATTTCTTTAATAAAGTAGATTAATCTAATAATATGATGGCAATTGGATGCTCAAATTGTATTAAGTTTATAAATGattattcaaaataattaattattaattatataaagtCCCTTCTCAAACAACGTCATCAATTTACGACGCTCAGTTTATTGACAGTTAGCCTAGGCACGGTGAGTGGTAAGTTCCTGAAGGGAAAAAACAATGACGTTGCATTAGTATTAGAGATGCAACAATTATAGATTTTGTTGTTACAAATATAGTCTGAGAAATAATCATGGATTATGCATTCATTAATTTCACAACACTAATGTATATAATCACATGAACACTTCAGATTTGTATGTGTTATTTAATGCTGCCTTAACACAATAataaccaataataataataataataaccaatGGCTCTTTTGATGAAATAgatcacaaaatgatttagtTTTGTAAGTTGGTACATTCTATCAATATTTCTTTTGGACCTGAGGTTTATTACTGAGATGGAGGACTTGGTAACATGGTTAAAAAGATCTTGTTGgtttttatataaatgtataacATGTATAACATAAATAATACTATAACATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95570 lncRNA upstream 1141 8768688 ~ 8769064 (+) True G71475
TU95571 lncRNA upstream 4071 8765894 ~ 8766134 (+) True G71476
TU95558 lncRNA upstream 26415 8743528 ~ 8743790 (+) True G71463
XR_005639619.1 lncRNA upstream 122496 8646964 ~ 8647709 (+) True LOC120561615
TU95517 lncRNA upstream 149866 8594033 ~ 8620339 (+) True G71429
TU95621 lncRNA downstream 346655 9123163 ~ 9125732 (+) True G71517
TU95622 lncRNA downstream 346734 9123242 ~ 9125732 (+) False G71517
TU95620 lncRNA downstream 346814 9123322 ~ 9125732 (+) False G71517
TU95667 lncRNA downstream 543944 9320452 ~ 9320696 (+) True G71553
TU95668 lncRNA downstream 547309 9323817 ~ 9324017 (+) True G71554
XM_039805857.1 mRNA upstream 265753 8454764 ~ 8504452 (+) True LOC120562241
XM_039806352.1 mRNA upstream 385585 8364356 ~ 8384620 (+) True pomgnt2
XM_039806353.1 mRNA upstream 385585 8366524 ~ 8384620 (+) False pomgnt2
XM_039805237.1 mRNA upstream 460682 8283380 ~ 8309523 (+) False ano10a
XM_039806986.1 mRNA downstream 311676 9088184 ~ 9101502 (+) True LOC120562991
XM_039806987.1 mRNA downstream 311681 9088189 ~ 9101502 (+) False LOC120562991
XM_039804863.1 mRNA downstream 339203 9115711 ~ 9123087 (+) True popdc3
XM_039807105.1 mRNA downstream 351342 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA downstream 351342 9127850 ~ 9144293 (+) True bves
TU95565 other upstream 18762 8748943 ~ 8751443 (+) True G71470
XR_005639665.1 other upstream 460461 8283381 ~ 8309744 (+) True ano10a
XR_005639664.1 other upstream 460461 8283381 ~ 8309744 (+) False ano10a
TU95377 other upstream 647966 8121601 ~ 8122239 (+) True G71309
TU95170 other upstream 968825 7731022 ~ 7801380 (+) True G71147
unassigned_transcript_307 other downstream 33843 8810351 ~ 8810439 (+) True trnay-gua_1
unassigned_transcript_308 other downstream 34226 8810734 ~ 8810823 (+) True trnay-gua_2
unassigned_transcript_309 other downstream 34601 8811109 ~ 8811197 (+) True trnay-gua_3
unassigned_transcript_310 other downstream 35740 8812248 ~ 8812336 (+) True trnay-gua_4
unassigned_transcript_311 other downstream 36838 8813346 ~ 8813434 (+) True trnay-gua_5

Expression Profile