RNA id: TU95676


Basic Information

Item Value
RNA id TU95676
length 267
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G71562
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 9455375 ~ 9455641 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attagtcggattcaggagttcctcaaagtgctccttccaccgccctattacctcctcagttgaggtcaacagtgtgcCATCCTTACtatacacagcttggatggttccccgcttccccctcctgaggtggcgaacagttttccagaagcaccttggtgccgaccgaaagtccttctctatgtcttctccaaacttctcccacacccgctgctttgcctctttcacggcagaggctgcagcccttcgggcccttcggtaccctgcaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95671 lncRNA upstream 83427 9371004 ~ 9371948 (+) True G71557
TU95668 lncRNA upstream 131358 9323817 ~ 9324017 (+) True G71554
TU95667 lncRNA upstream 134679 9320452 ~ 9320696 (+) True G71553
TU95621 lncRNA upstream 329643 9123163 ~ 9125732 (+) True G71517
TU95707 lncRNA downstream 372953 9828594 ~ 9829307 (+) True G71591
TU95726 lncRNA downstream 547840 10003481 ~ 10003693 (+) True G71607
TU95728 lncRNA downstream 746035 10201676 ~ 10202139 (+) False G71609
TU95729 lncRNA downstream 746035 10201676 ~ 10202591 (+) True G71609
TU95864 lncRNA downstream 1124519 10580160 ~ 10591406 (+) True G71723
XM_039805944.1 mRNA upstream 265286 9147615 ~ 9190089 (+) True hace1
XM_039805945.1 mRNA upstream 265286 9147617 ~ 9190089 (+) False hace1
XM_039807105.1 mRNA upstream 310621 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA upstream 311082 9127850 ~ 9144293 (+) True bves
XM_039804863.1 mRNA upstream 332288 9115711 ~ 9123087 (+) True popdc3
XM_039805613.1 mRNA downstream 551634 10007275 ~ 10200334 (+) False ascc3
XM_039805615.1 mRNA downstream 552017 10007658 ~ 10200334 (+) True ascc3
XM_039805614.1 mRNA downstream 552265 10007906 ~ 10200334 (+) False ascc3
XM_039805616.1 mRNA downstream 552833 10008474 ~ 10200405 (+) False ascc3
XM_039805617.1 mRNA downstream 759852 10215493 ~ 10241076 (+) False sim1a
unassigned_transcript_348 other upstream 605655 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 606038 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 606804 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 607894 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 608220 8847067 ~ 8847155 (+) True trnay-gua_38
TU95730 other downstream 751774 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 1330013 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 1364654 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 1364654 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 2143396 11599037 ~ 11616242 (+) True G71896

Expression Profile