RNA id: TU95707


Basic Information

Item Value
RNA id TU95707
length 255
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G71591
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 9828594 ~ 9829307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggcacatcctaaggaaagctcattgtgggactggctctagtggctgtaattctgcaccaaggctgaatttcgggaaagagacttcagatacagtattaggggaccactaaggcctatataaaagagacttcagatacagtgttaggggaccactaaggcctatataaaagagatttcagatacagtattaggggaccactaaggtctatgtaaaagagacttcagatacagtattaggggaccactaaggcctat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95676 lncRNA upstream 372953 9455375 ~ 9455641 (+) True G71562
TU95671 lncRNA upstream 456646 9371004 ~ 9371948 (+) True G71557
TU95668 lncRNA upstream 504577 9323817 ~ 9324017 (+) True G71554
TU95667 lncRNA upstream 507898 9320452 ~ 9320696 (+) True G71553
TU95622 lncRNA upstream 702862 9123242 ~ 9125732 (+) False G71517
TU95726 lncRNA downstream 174174 10003481 ~ 10003693 (+) True G71607
TU95728 lncRNA downstream 372369 10201676 ~ 10202139 (+) False G71609
TU95729 lncRNA downstream 372369 10201676 ~ 10202591 (+) True G71609
TU95864 lncRNA downstream 750853 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA downstream 750853 10580160 ~ 10589062 (+) False G71723
XM_039805944.1 mRNA upstream 638505 9147615 ~ 9190089 (+) True hace1
XM_039805945.1 mRNA upstream 638505 9147617 ~ 9190089 (+) False hace1
XM_039807105.1 mRNA upstream 683840 9127850 ~ 9144754 (+) False bves
XM_039807106.1 mRNA upstream 684301 9127850 ~ 9144293 (+) True bves
XM_039804863.1 mRNA upstream 705507 9115711 ~ 9123087 (+) True popdc3
XM_039805613.1 mRNA downstream 177968 10007275 ~ 10200334 (+) False ascc3
XM_039805615.1 mRNA downstream 178351 10007658 ~ 10200334 (+) True ascc3
XM_039805614.1 mRNA downstream 178599 10007906 ~ 10200334 (+) False ascc3
XM_039805616.1 mRNA downstream 179167 10008474 ~ 10200405 (+) False ascc3
XM_039805617.1 mRNA downstream 386186 10215493 ~ 10241076 (+) False sim1a
unassigned_transcript_348 other upstream 978874 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 979257 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 980023 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 981113 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 981439 8847067 ~ 8847155 (+) True trnay-gua_38
TU95730 other downstream 378108 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 956347 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 990988 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 990988 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 1769730 11599037 ~ 11616242 (+) True G71896

Expression Profile