RNA id: TU95729


Basic Information

Item Value
RNA id TU95729
length 916
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G71609
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10201676 ~ 10202591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctgacaacattatggaaaggatttctaaggaggtcgacctttctgttaaagagtaagatcctttttttaaacataaaaacatccgcgaaattgcgttcgctaaacccaccagactccatgtaaataaacagtaatttaagcattgtaaaatacacttaattcaaagtcgacagaaacaaaataaaactatgaaaagccgttttgggtcatctttccacttttccaaccatcacaactctagttttggttgaaataaacacatagtttacagatttacatggaaaatgtgttggctctatacacgctaaaagtattgcttttttaaatggagtctggtgggtttagcgctagcgacttcagagcggtttctggttaaacagaaaggtctcaaagaggttttaaaggtctatctctgaagggatcctttccagaATGTTGTcaaacacttagaatattaatctgagcctgtcagtggcgaaacgagcacttttgtgaaggtaaatacaagctggacaattaccCTGTTAACTtgcattgtagcttgtttcgccgctaagcgatctcgcttaatactggaccaatgtcaaagattgttgttcccatcattcacttagacacaaaaacataggaaaatagggtccaggttgaaaaaaacattagttaccctttaaaatatttttatgttCTCATTTTGTTGATTTAACCTTGATTGAACAAGGCTGTCACATTCCACGTGGCTGTGAAATAAAGCTTTCTTTTTGCAAAAGTTGGGAGGACACATCCGTAGTCAGTATCTGAAAATCCTATGAAAGCTGGACACACAAAGGCCTCACTATTCTTCAGATGAACTAGGTCATCCAACCACatctaagataaaaaaaaaagctttagtcTGTATGCAGTGAGCCAATAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95726 lncRNA upstream 197983 10003481 ~ 10003693 (+) True G71607
TU95707 lncRNA upstream 372369 9828594 ~ 9829307 (+) True G71591
TU95676 lncRNA upstream 746035 9455375 ~ 9455641 (+) True G71562
TU95671 lncRNA upstream 829728 9371004 ~ 9371948 (+) True G71557
TU95668 lncRNA upstream 877659 9323817 ~ 9324017 (+) True G71554
TU95864 lncRNA downstream 377569 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA downstream 377569 10580160 ~ 10589062 (+) False G71723
TU95887 lncRNA downstream 415666 10618257 ~ 10618575 (+) True G71738
TU95891 lncRNA downstream 541420 10744011 ~ 10744271 (+) True G71741
TU95873 lncRNA downstream 543417 10746008 ~ 10751849 (+) False LOC120561920
XM_039805616.1 mRNA upstream 1271 10008474 ~ 10200405 (+) False ascc3
XM_039805613.1 mRNA upstream 1342 10007275 ~ 10200334 (+) False ascc3
XM_039805615.1 mRNA upstream 1342 10007658 ~ 10200334 (+) True ascc3
XM_039805614.1 mRNA upstream 1342 10007906 ~ 10200334 (+) False ascc3
XM_039805945.1 mRNA upstream 1011587 9147617 ~ 9190089 (+) False hace1
XM_039805617.1 mRNA downstream 12902 10215493 ~ 10241076 (+) False sim1a
XM_039805620.1 mRNA downstream 12902 10215493 ~ 10241076 (+) False sim1a
XM_039805618.1 mRNA downstream 13043 10215634 ~ 10241076 (+) True sim1a
XM_039806375.1 mRNA downstream 125573 10328164 ~ 10357777 (+) True LOC120562586
XM_039806376.1 mRNA downstream 125694 10328285 ~ 10357777 (+) False LOC120562586
unassigned_transcript_348 other upstream 1351956 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1352339 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1353105 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1354195 8847392 ~ 8847481 (+) True trnay-gua_39
unassigned_transcript_344 other upstream 1354521 8847067 ~ 8847155 (+) True trnay-gua_38
TU95730 other downstream 4824 10207415 ~ 10208197 (+) True G71610
TU95885 other downstream 583063 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 617704 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 617704 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 1396446 11599037 ~ 11616242 (+) True G71896

Expression Profile