RNA id: TU95876


Basic Information

Item Value
RNA id TU95876
length 1916
lncRNA type sense_over
GC content 0.43
exon number 6
gene id LOC120561920
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10746008 ~ 10751849 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAAAACATTCTGTATTtgagtttatttaaaatgtcttacaTTACCTCAGCTTTAATAAGCCAAACCCTGTGTACATATCTAAGCCTATCTTAGGTGTAAGATGTGCATCGTCGGCATCAGTGTTGTTTTAAATggatgttatttttcatttgaatggtGTACAGTCTCCTTTTAACATTAGAATCCTACAATCAAAACTAAGGAACATCCCATTCCTCTGGACTTTCCTCCAACCATTCCCAGCATCATCCAGGGAGTGATGCAAGCCCATTCCTGGAGCCATGTCAGTGCTGCCAGTGATGGAGCAACAGTGGCCTGAGTGAGTATAAATATCAGCATGTTTTACACACTCAGCCATCACACAGGGGAAATCACTCAAAGAGCTGACGGAGACACCTAAAGGTCTGAAGAAGTCTACTTGATTGAACAGTTTGAACCGTCCTAAGATGAAGACATTCAGTGTTGCAGTTGCAGTGGCCGTCGTGCTCACCTTTATTTGTATTCAGCAGAGCTCTGCTGTCCCAGCCACTGAAGTGCAAGAGCTGGAGGAGCCAATGGGCATTGAGAATCTGGCTGCTGAACATGAGGAGACATCAGTGGACTCGTGGAAGATGCCGTATAACAACAGACACAAGCGTGGCTTTAAGTGTCGCTTTTGCTGCGGCTGCTGCACCCCGGTGTCTCGGTGTGGATTCAGATTCTGAGGATTCCTGCTCCAACAACTACTGTACAATTCAGATGTTTCTAAACTTCATCACTCAAAGAGCTGACGGAGACACCTAAAGGTCTGAAGAAGTCTACTTGATTGAACAGTTTGAACCGTCCTAAGATGAAGACATTCAGTGTTGCAGTTGCAGTGGCCGTCGTGCTCACCTTTATTTGTATTCAGCAGAGCTCTGCTGTCCCAGCCACTGAAGTGCAAGAGCTGGAGGAGCCAATGGGCATTGAGAATCTGGCTGCTGAACATGAGGAGACATCAGTGGACTCGTGGAAGATGCCGTATAACAACAGACACAAGCGTGGCTTTAAGTGTCGCTTTTGCTGCGGCTGCTGCACCCCCGGTGTCTGCGGATTGTGCTGCAGATTCTGAGGATTCCTGCTCCAACAACTACTGTACAATTCAGATGTTTCTAAACTTCATCATGCTGTAGTTAATGTGCATGTACTCAGTGATGTGACTGCATCGTCCACTGGTTTTGCTAAATATCTGATACTGCTGTGGATTGTcacaataaagttgaatgtCACTATATGAAATTCTGTCGGTGTTTTAATTAGAAATGGAGCTTTTTCACAGAAGCCATTTAGTCACAGTAGGTAAAGCACAGGTGGATACATAATAACATTAATTATGATGGcagaattccatttagctgcttcagtttcagggtcctggttttgtgcacgctggctcactgtcactctgtcacgacttactgggacacttggaCAGAACTGAGCCGTCTTTAATGTCAGGAGTAACAccgagtcaaaatgtctgctgtgaacaAAGGCCAATGGCTGAAGAAGGGGAAAAACGTCATTGTATCGTATTTTTACCTTTACAAAACGTTGCAGTCGTGTTTAACACTCAGAGGTCTAAGCCATTTTTAACCAATCTTTGGTTCGCCTGGTTTCCTTGTAATAATGCTTATATAATCTCAACCCTGTTTTGCACATTCATGTTATAGACCTTTTTTTCCAGGACAACCTGGGCTATCAAGACATGTATGCTGTTGGGATGTCACATGAATGTATACATTGGTAAATGACTATAAATACAAAAGACTAAACTGGAATTGAATCTCACAGAAATGGGTTGAACTCACGCAGAGATCAATAATGTGTAAGGCTTTTGGATTTTGAAAATTGTTCTCCCACGTCTTAGCAATCAGAGGGCATTAAACTAAGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95891 lncRNA upstream 1737 10744011 ~ 10744271 (+) True G71741
TU95887 lncRNA upstream 127433 10618257 ~ 10618575 (+) True G71738
TU95864 lncRNA upstream 154602 10580160 ~ 10591406 (+) True G71723
TU95866 lncRNA upstream 156946 10580160 ~ 10589062 (+) False G71723
TU95729 lncRNA upstream 543417 10201676 ~ 10202591 (+) True G71609
XR_005639862.1 lncRNA downstream 167 10752016 ~ 10752596 (+) True LOC120562885
TU95992 lncRNA downstream 368070 11119919 ~ 11120208 (+) True G71826
TU96001 lncRNA downstream 410847 11162696 ~ 11163045 (+) True G71835
TU96004 lncRNA downstream 435273 11187122 ~ 11187358 (+) True G71838
XR_005639740.1 lncRNA downstream 484445 11236294 ~ 11309852 (+) True LOC120562313
XM_039807255.1 mRNA upstream 16887 10663472 ~ 10729121 (+) True rspo2
XM_039807254.1 mRNA upstream 18263 10662478 ~ 10727745 (+) False rspo2
XM_039807253.1 mRNA upstream 18263 10662787 ~ 10727745 (+) False rspo2
XM_039805508.1 mRNA upstream 89212 10621192 ~ 10656796 (+) True eif3ea
XM_039804822.1 mRNA upstream 227017 10516857 ~ 10518991 (+) True LOC120561655
XM_039806326.1 mRNA downstream 33832 10785681 ~ 10961130 (+) False LOC120562569
XM_039806327.1 mRNA downstream 33832 10785681 ~ 10961130 (+) False LOC120562569
XM_039806330.1 mRNA downstream 33832 10785681 ~ 10961130 (+) False LOC120562569
XM_039806328.1 mRNA downstream 33832 10785681 ~ 10961130 (+) False LOC120562569
XM_039806329.1 mRNA downstream 33832 10785681 ~ 10961130 (+) False LOC120562569
TU95730 other upstream 537811 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 1896288 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1896671 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1897437 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1898527 8847392 ~ 8847481 (+) True trnay-gua_39
TU95885 other downstream 33805 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 68446 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 68446 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 847188 11599037 ~ 11616242 (+) True G71896
TU96069 other downstream 847188 11599037 ~ 11616242 (+) False G71896

Expression Profile