RNA id: XR_005639862.1


Basic Information

Item Value
RNA id XR_005639862.1
length 482
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC120562885
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 10748123 ~ 10752652 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGAATCGATGCATTATTGATTGCATTTATGCTGTTATATCGTTATTTTGGCCCGTTCGCTCCACATTTAGTGTTCGTTCCACATTTAATATACGTAGCGTCAAAGTAACACCGTAAGGAAGGGGGCAGCATCTCCAACATTGTGATTGAAAACACCAAAAAAGAAGATATTCAGATCAGGAAGACAGCCTCTGGTTGGTCGACACACTCACCTGACAACATTCCGGGAGTCAAGATGGCTGGAGCCAGTAAACAGTGGATTTATGGTTCCTGAATTATTGTTCAAAGTCTCAGAAAAGACACTGCAGTTTCAGACTGGATTAGAAAGCTTCTGGAAGGCCTAGTGGGAGACCTCCCTGGAAAGGGCCAGATTCTAGCTATCGTGACACTGCAATTCCATGATGTATTAAGAAGCTTCTGGATGGCCTACAATCGCATGGAAGACCTCGTTGAAACGGCACGTTGTTCTGcttctaaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95873 lncRNA upstream 167 10746008 ~ 10751849 (+) False LOC120561920
TU95874 lncRNA upstream 167 10746008 ~ 10751849 (+) False LOC120561920
TU95875 lncRNA upstream 167 10746008 ~ 10751849 (+) False LOC120561920
TU95876 lncRNA upstream 167 10746008 ~ 10751849 (+) False LOC120561920
TU95877 lncRNA upstream 167 10746008 ~ 10751849 (+) True LOC120561920
TU95992 lncRNA downstream 367323 11119919 ~ 11120208 (+) True G71826
TU96001 lncRNA downstream 410100 11162696 ~ 11163045 (+) True G71835
TU96004 lncRNA downstream 434526 11187122 ~ 11187358 (+) True G71838
XR_005639740.1 lncRNA downstream 483698 11236294 ~ 11309852 (+) True LOC120562313
TU96041 lncRNA downstream 683875 11436471 ~ 11436699 (+) True G71873
XM_039805262.1 mRNA upstream 825 10746351 ~ 10751191 (+) False LOC120561920
XM_039807255.1 mRNA upstream 22895 10663472 ~ 10729121 (+) True rspo2
XM_039807254.1 mRNA upstream 24271 10662478 ~ 10727745 (+) False rspo2
XM_039807253.1 mRNA upstream 24271 10662787 ~ 10727745 (+) False rspo2
XM_039805508.1 mRNA upstream 95220 10621192 ~ 10656796 (+) True eif3ea
XM_039806326.1 mRNA downstream 33085 10785681 ~ 10961130 (+) False LOC120562569
XM_039806327.1 mRNA downstream 33085 10785681 ~ 10961130 (+) False LOC120562569
XM_039806330.1 mRNA downstream 33085 10785681 ~ 10961130 (+) False LOC120562569
XM_039806328.1 mRNA downstream 33085 10785681 ~ 10961130 (+) False LOC120562569
XM_039806329.1 mRNA downstream 33085 10785681 ~ 10961130 (+) False LOC120562569
TU95730 other upstream 543819 10207415 ~ 10208197 (+) True G71610
unassigned_transcript_348 other upstream 1902296 8849632 ~ 8849720 (+) True trnay-gua_42
unassigned_transcript_347 other upstream 1902679 8849249 ~ 8849337 (+) True trnay-gua_41
unassigned_transcript_346 other upstream 1903445 8848483 ~ 8848571 (+) True trnay-gua_40
unassigned_transcript_345 other upstream 1904535 8847392 ~ 8847481 (+) True trnay-gua_39
TU95885 other downstream 33058 10785654 ~ 10867832 (+) False LOC120562569
TU95893 other downstream 67699 10820295 ~ 10821417 (+) True G71743
TU95894 other downstream 67699 10820295 ~ 10821500 (+) False G71743
TU96068 other downstream 846441 11599037 ~ 11616242 (+) True G71896
TU96069 other downstream 846441 11599037 ~ 11616242 (+) False G71896

Expression Profile