RNA id: TU96106


Basic Information

Item Value
RNA id TU96106
length 1627
lncRNA type read_through
GC content 0.39
exon number 2
gene id G71921
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11706557 ~ 11772009 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aagagagagagagagagagagagagagagagaggaagagagagagagagagagagagagagtgcagcCAGAGTTCAGGATGTCAGGCTTCCAGAGAGTTTAGATGGAGACGTTTTGAAGCCTATTGAATCGTAGAGCCGCCACAGCCTTAACACaggtgtattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtatgcATTTATGTGTGTACGTGCATTCTTTTCAAACCTCTCCATACTGTATAAGTACTCCAGCCTCCCTCTATGCTTTGTATACTAGCCTACCTCCTTCGCGATTAAAAGCCtgttttaaaggtgcagtaagtgatTCTGCCCCCGTTCTTTGCTCGGAGGAGATGGAAAAAGAAGAACAGCAAGGCAGTTAAAAGTGGCGCAGACGTACAGAGCAAGAGTGGAACCGTGGAGACATTTTTGTATGCATATTGAGTCAAAATTCAAACCTGTTAAAAGATGACAGAGCATACAGAGTACTGTACTTGCCATCTATTTTGAGATCTCCGTAGATTTTCCATGATGATGAAATGGTCGCTATACCAGTGGGTTGTTGGgtcatgcatacatacattgtGTGCTTGAATATGCCTAataattcacaaatgtgtataCTGAAGGTGTGGGTAGTGAAAATACTTGAAAACGGATACTCTAGCCTTCGAGGTAGTGTAGTACTAATACCAATGTTGTACAGAATTCCCTTTAAGACTAACTCCTCAGTTATGAATTTGTACTCCGAAGTGTGACTTAGAAAAACTATGAAGCAGGAGTGAGTGTATGTAATATAAAGTGTATATCTGTAATCCACTCTTACCAAACCCTTATATACAGCGGTAGAAACCAAATGGCATTGCTAGTGCTCTTAGACTAGGTTACTGCTTTAACCGTTCTCATTTTGTCCCATTCTAGCTAAGGTTTCTTTGAGAATGTCTTTTCATGGTGCCAGCTAACACATGTTAATGTCATTTCTGGTTTAGAGGCTTTTTGTGTGGGTGATTCCATAGGTTAATGGCAAAAGATTTGTTCTGTGACGGCCGTGTGGCACAGCTTTTTAGCTTCGTTTCCCCATTGAAAGTTTGATACTGCTAGGCACAGCactgcttattttttttcttttcataaagATGTAAGAGTATGTTTTTAGTCGTTCTCTTCGCTAAACTGTAGGATTTGTTCAGTAGCTAGTCATGGCTGCCCTCCCAGAGGGGCTGGCAGgtgttgttctttttctctttggtTGGGTTATTATCATGTTTCTTAAGTTGTATTTTTTGTGTccgtattgcttttttttttctttttttttttatgaatttcatGATTAATTTACCTTAGAAGACATTATTATTCCAAATGTATTTGGTTGATATCTGTATTTATTATCACTTCAAAAAGGATTAGAGGACAGAGGCAGACAGGAgcgtttgttttaatttgattttttcggggttgtttttgtttttaatactgtGTAGTTTTCATGCCAGATGTGAAAGCTCTACCTCGTCTGAGCCATTCTCAGTTCTGTTACACTTTTGTACATCATTTCAAAAAGATGTAATGTCATGTCCACaataaaagacacacaaaatggCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96071 lncRNA upstream 136490 11537184 ~ 11570067 (+) True mbpb
TU96053 lncRNA upstream 222914 11483406 ~ 11483643 (+) True G71882
TU96042 lncRNA upstream 224468 11481645 ~ 11482089 (+) False depdc1b
TU96041 lncRNA upstream 269858 11436471 ~ 11436699 (+) True G71873
XR_005639740.1 lncRNA upstream 396705 11236294 ~ 11309852 (+) True LOC120562313
TU96118 lncRNA downstream 49631 11821640 ~ 11821934 (+) True G71929
TU96144 lncRNA downstream 440001 12212010 ~ 12215147 (+) True G71952
TU96145 lncRNA downstream 444254 12216263 ~ 12216560 (+) True G71953
TU96151 lncRNA downstream 501385 12273394 ~ 12275941 (+) True G71959
TU96153 lncRNA downstream 558059 12330068 ~ 12330962 (+) True G71961
XM_039805417.1 mRNA upstream 90498 11599114 ~ 11616059 (+) True LOC120562012
XM_039805416.1 mRNA upstream 90657 11599216 ~ 11615900 (+) False LOC120562012
XM_039805420.1 mRNA upstream 90657 11599216 ~ 11615900 (+) False LOC120562012
XM_039805418.1 mRNA upstream 90657 11599216 ~ 11615900 (+) False LOC120562012
XM_039805419.1 mRNA upstream 90657 11599216 ~ 11615900 (+) False LOC120562012
XM_039805711.1 mRNA downstream 198868 11970877 ~ 11975946 (+) True LOC120562168
XM_039805296.1 mRNA downstream 655532 12427541 ~ 12455916 (+) False LOC120561949
XM_039805295.1 mRNA downstream 655580 12427589 ~ 12455916 (+) True LOC120561949
XM_039805297.1 mRNA downstream 669905 12441914 ~ 12455916 (+) False LOC120561949
XM_039806899.1 mRNA downstream 693940 12465949 ~ 12476564 (+) True tbc1d31
TU96068 other upstream 90315 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 90315 11599037 ~ 11616242 (+) False G71896
TU95885 other upstream 838725 10785654 ~ 10867832 (+) False LOC120562569
TU95894 other upstream 885057 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 885140 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 988808 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 1352925 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1696218 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 2361602 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 2403840 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile