RNA id: TU96107


Basic Information

Item Value
RNA id TU96107
length 496
RNA type TUCP
GC content 0.49
exon number 2
gene id LOC120561922
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 11708381 ~ 11710258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTTGATCACAAACATCCAAGATGCCGTCTGCAAGTGTGCGCATGTCGATTGCATTGGTTATAGTGATTCTTTTGCGATTGTCTGCAACAAATAGAAGAAATCATGCGAGGAGAAGAAGACGTCTACAACGCCTACGAATGCTGGTGGATCAGTTTATGACTGGTGAGCCAACAACATACTGTGCCATACACCACAACATGCCTATACTGCGCCTGTGGTTCGATGTGGAGACTGAGCTGAGGCAGGATTTCCGCCTCACCAGAAGAGCGATGCACAGCTTACAGAGGCTTTTGCACAGGGAGCAGGACCATGGCTGGGGTAATGAGCTTGAGGTACTCATATACACCTATTGGCTGGCACATGGACTCTCTTATCGGGTGGTGGCCCGTGTCTTTAATGTGCCAAAGGCCACAGTTCATGACATCATCCACAGAGTGGCCCAGAACATATGGGACAATCTGAGGAGAGCAATCGACTTCCCTCAAACAGTGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96071 lncRNA upstream 138386 11537184 ~ 11570067 (+) True mbpb
TU96053 lncRNA upstream 224810 11483406 ~ 11483643 (+) True G71882
TU96042 lncRNA upstream 226364 11481645 ~ 11482089 (+) False depdc1b
TU96041 lncRNA upstream 271754 11436471 ~ 11436699 (+) True G71873
XR_005639740.1 lncRNA upstream 398601 11236294 ~ 11309852 (+) True LOC120562313
TU96118 lncRNA downstream 112131 11821640 ~ 11821934 (+) True G71929
TU96144 lncRNA downstream 502501 12212010 ~ 12215147 (+) True G71952
TU96145 lncRNA downstream 506754 12216263 ~ 12216560 (+) True G71953
TU96151 lncRNA downstream 563885 12273394 ~ 12275941 (+) True G71959
TU96153 lncRNA downstream 620559 12330068 ~ 12330962 (+) True G71961
XM_039805417.1 mRNA upstream 92394 11599114 ~ 11616059 (+) True LOC120562012
XM_039805416.1 mRNA upstream 92553 11599216 ~ 11615900 (+) False LOC120562012
XM_039805420.1 mRNA upstream 92553 11599216 ~ 11615900 (+) False LOC120562012
XM_039805418.1 mRNA upstream 92553 11599216 ~ 11615900 (+) False LOC120562012
XM_039805419.1 mRNA upstream 92553 11599216 ~ 11615900 (+) False LOC120562012
XM_039806390.1 mRNA downstream 11607 11721116 ~ 11768925 (+) False LOC120562594
XM_039806389.1 mRNA downstream 14753 11724262 ~ 11768925 (+) False LOC120562594
XM_039806392.1 mRNA downstream 14753 11724262 ~ 11768269 (+) False LOC120562594
XM_039806391.1 mRNA downstream 24755 11734264 ~ 11768925 (+) True LOC120562594
XM_039805711.1 mRNA downstream 261368 11970877 ~ 11975946 (+) True LOC120562168
TU96068 other upstream 92211 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 92211 11599037 ~ 11616242 (+) False G71896
TU95885 other upstream 840621 10785654 ~ 10867832 (+) False LOC120562569
TU95894 other upstream 886953 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 887036 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 1051308 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 1415425 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1758718 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 2424102 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 2466340 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile