RNA id: TU96144


Basic Information

Item Value
RNA id TU96144
length 3138
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G71952
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12212010 ~ 12215147 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGTTTTTATTTGGCACAACACAAAAGTGCTTTACGATAACACTGCCAATGACTAGTTTGGCATGAAAACATCCTCATGGTTCCATTGTTGGTCTCATTAATTAAACCTTGGAATAAAACCTCTCCTTAAAAGTATATAAAAATGATActcagtttttcttttgttattgcTCAGTCAGGCCCCTCACAACGAAAACATATCATTTGCAGCttattacatttttgtgcaAATCGTTTGGATGAAGTTTTCAGTCTGCTTTGGCTTTATTGTCCGTTGTATTAAAATCTGAACATAGGTTAGTGTTTCAACATGGCAAAAAATGTGAAGCCTAGAAATTACGTCCACATgttttatatacatatttattaaaaatgatttctaaacatatttattgtttttgcagTGTGGACATAGAACCTTAGGGGTCTTAAATGTACATGGAGGATATCTTACTTATTACAAAATACTATAAACCACAGAATTATCCTACATAAATATGCTGGTtgtctacttaagtacaaaaacacAGGTTCATCACCTCTCTTCAAATCAATAACTTATAAGTTgcatttttattgttgttattgcAGACAAACCCCCCAGTTCGTAATTTCACATTGTTTGGTCAGATAGTCAATGTCAGAACAGTTGAAAgcacaacaaacacatttttctattTTCCATTTTTCTTATAAAAACATGATGGTAGCTAagcaaaaatagaataaaaaaatgtctataTATAAAATGCATTGAAATACAAAGTAATAAGAAGTAAACGGCTACAGCAAAGGGCCGACAAGGCAGAGAAATCCAGCTTTGACTTAATAAAGAACTGTGTATAAAAAAGGACACTTTTATATTTAATACCACAAACAGATCATACATTACTTGAGACCTTCAGCATGCATCAGTCTTTGGATGGCATCCTAATGCCTTGATGCAATGCAAAGAGAACCACTGAGGTATTTCATTTTGATTACGTCAAGCATCGTGCTGGATGACGGGAGAGACATAAAAGTGCATAAGAATTAAACTCATGTCTGCTCCTGGTCTTTAGCAAACACTGGACTCATTTCATTCCAAAATTCTGTTCCCTTCAATCAAGTTATTCACATTCCTGTTTTCAGGTAGTACTTTTCTCCCATTTGGTGCATTAATGTATTCttcacacattttctttttgcctTGCAGTTCACTCAACACAATGCAAGGAACCAGAGGGTTGTAGCTATCCTCAATACAGTATgtggagaaaggaagagagcaAGGACACATGGAAGGCAAAAATCACATAATCTTTGGATTGGAACATGTCCACCAAAATAAGTGTTAAAACCATTTCGTAACATAAACTtatcatttatataaaaaagaaaagaaaaacaaaagtcattgtttctgtaaaaagaaaacagtcACAGCAGCAATGATACACCATTTCTCTTCTGGTCACATGTTTACCTGGTCACCTGATCAGGTGGAGATTATATCTACCAATCAGTAATCAGTTTGAGATTCTTCACTTTGTAAACATTGAGAAAAATACTGCAATCACGTCATATGGGAATAACAACAAGACATTCGAACATCGTAGATTTTGCAGCCTCTTACTGTAATAGCGTGACTGGATACTTCTATGGATGTTGCAACTTTTCACGTTTAACAGACATGCACCACAGTGACTGATGTATTTTCTTTAAACAGCAAATCAAAAAGTGTAATGTCAAGCACAAACACAACCTGCATCTAATAGCAGTGAATTGAAATGTAGGAGTTGCAATTATGAATTGACtgatacataaaaaaatgtcttctgtaGACACAGATAACTACATTTATAATGTGTGAACTCTATGAGGAAGTTTCTTTCCCATATGACATGAGTGCAACAAAAGAAAGAGAGCAGCTTTTCATTTTAAAGCCCTTTCCGTGCCCTTTCactcttattacattgaaactGTAGCTCTTCTTTTCTTAACAACAGTTCTTAACAACTTGTACTTAGATGACAGAATAGGGCGATGTCTCCTAAAacgacatacagtatatgaccgTTCCATAGGGTTAGAAAAACATCAGGAATTAGCTTAAAATGATTTGCGTGaaaactattactattacttcCGTGACTACATCACGGAAGTTACTAAATTACGGACTTAAGTTTTTAAAGTTCATGacagttgacttttggttttcctgtgttttcattgacccatccaccacaccAAACTGCCTCCTTATGCCGACTTTTACTTTGTCACCTTATTGCCACTAGGGGTCGCCTTCTAAGAACAAACGTAAATATAGGTTGTTATAGGCTGCTAGCGAAACAGACCTATACGGTTGTTTACTGTGTGAGGACGGTCTGTTCTAAAACATTACACCAATGCATTGCCCCCAGAGCTACAGTAAGAACTTTGAAGTTGTGGTATTACATCTTTAAACAGATATAACTTCAGTATAACTTCTTGTTGAAGCCACACAGACCATCCAGCATAGAGATAAGCCCCACCAGATGTAATtagtagcgctccacctcccgcacaagTTCTggctagtgttaatttcgtcagacgagacaagactaaatatgttcgtgtacgacctttttttccatgactaagacgagacgatgacgagactgcgccaatgtccaaaaactctgactaagactaaattaacatgcattattgttgaagaaaaaagacgagactaaaatgttttgcataaaataaaaactaagataaaatccctcttcattttcgtctacaatcgtctctactttttcatcatgagatagaatattcagctgttactgagacccggtgccgacaggtgccctaactaccgttatctaccggaccgaatagcctgcgcttctctccgatgctcctaaacggacgttagagtcaaccgaaacatcgctgcatggggcgctagttaacactacacttggcagcagctaacgttagcctaccgttagccagcagttggatttaaccatggatttaacacagttaaaatgctgacagctagctaaacggtgtaaaggtttgtctctatttccaacacgagacgtacgacagtctgcagctgccgttgtctgaaaaacaacacatgttgcgttcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96118 lncRNA upstream 390076 11821640 ~ 11821934 (+) True G71929
TU96106 lncRNA upstream 440001 11706557 ~ 11772009 (+) True G71921
TU96071 lncRNA upstream 641943 11537184 ~ 11570067 (+) True mbpb
TU96053 lncRNA upstream 728367 11483406 ~ 11483643 (+) True G71882
TU96042 lncRNA upstream 729921 11481645 ~ 11482089 (+) False depdc1b
TU96145 lncRNA downstream 1116 12216263 ~ 12216560 (+) True G71953
TU96151 lncRNA downstream 58247 12273394 ~ 12275941 (+) True G71959
TU96153 lncRNA downstream 114921 12330068 ~ 12330962 (+) True G71961
TU96161 lncRNA downstream 137863 12353010 ~ 12353491 (+) True G71969
XR_005639635.1 lncRNA downstream 155577 12370724 ~ 12371829 (+) True LOC120561687
XM_039805711.1 mRNA upstream 236064 11970877 ~ 11975946 (+) True LOC120562168
XM_039806390.1 mRNA upstream 443085 11721116 ~ 11768925 (+) False LOC120562594
XM_039806389.1 mRNA upstream 443085 11724262 ~ 11768925 (+) False LOC120562594
XM_039806391.1 mRNA upstream 443085 11734264 ~ 11768925 (+) True LOC120562594
XM_039806392.1 mRNA upstream 443741 11724262 ~ 11768269 (+) False LOC120562594
XM_039805296.1 mRNA downstream 212394 12427541 ~ 12455916 (+) False LOC120561949
XM_039805295.1 mRNA downstream 212442 12427589 ~ 12455916 (+) True LOC120561949
XM_039805297.1 mRNA downstream 226767 12441914 ~ 12455916 (+) False LOC120561949
XM_039806899.1 mRNA downstream 250802 12465949 ~ 12476564 (+) True tbc1d31
XM_039806900.1 mRNA downstream 250802 12465949 ~ 12476564 (+) False tbc1d31
TU96107 other upstream 502501 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 595768 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 595768 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1390510 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1390593 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 545670 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 909787 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1253080 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1918464 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1960702 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile