RNA id: TU96161


Basic Information

Item Value
RNA id TU96161
length 482
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G71969
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12353010 ~ 12353491 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagagacttctttgcaattatgaacatatttattgtacatacaacatgtaaatgtacgagtctctggagattggactccatcgaacccaaatatcctaaagggtttaaggaccccaaacaaatcccctgatggagtccagacactggtggtggagaATAAATAGAGGGACCATCAACAGCCAAGCCGAGATGCAACCCAGGTCCGAGGGCGTGACCACCGgtggcagaaggggaggaggcgggacgcactctatttcctgaaacgacaactgccaaccgtggaagaaagagcagatttaaagcagggtatcaagctgtgataggctcgtcGACAAATGGTcgaccctgattggtttaactaacaacaacaacacagctgttctgattactactgacaagtgacgtaccgtgaaacagcttatcattatgagtgatggaaaagtgaatgaagtcttcctttaagaatttacgctgagcttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96153 lncRNA upstream 22048 12330068 ~ 12330962 (+) True G71961
TU96151 lncRNA upstream 77069 12273394 ~ 12275941 (+) True G71959
TU96145 lncRNA upstream 136450 12216263 ~ 12216560 (+) True G71953
TU96144 lncRNA upstream 137863 12212010 ~ 12215147 (+) True G71952
TU96118 lncRNA upstream 531076 11821640 ~ 11821934 (+) True G71929
XR_005639635.1 lncRNA downstream 17233 12370724 ~ 12371829 (+) True LOC120561687
TU96184 lncRNA downstream 132984 12486475 ~ 12486757 (+) True G71987
TU96186 lncRNA downstream 134146 12487637 ~ 12487865 (+) True G71989
TU96198 lncRNA downstream 149020 12502511 ~ 12633773 (+) True G71995
TU96209 lncRNA downstream 165172 12518663 ~ 12520005 (+) True G72006
XM_039805711.1 mRNA upstream 377064 11970877 ~ 11975946 (+) True LOC120562168
XM_039806390.1 mRNA upstream 584085 11721116 ~ 11768925 (+) False LOC120562594
XM_039805296.1 mRNA downstream 74050 12427541 ~ 12455916 (+) False LOC120561949
XM_039805295.1 mRNA downstream 74098 12427589 ~ 12455916 (+) True LOC120561949
XM_039805297.1 mRNA downstream 88423 12441914 ~ 12455916 (+) False LOC120561949
XM_039806899.1 mRNA downstream 112458 12465949 ~ 12476564 (+) True tbc1d31
XM_039806900.1 mRNA downstream 112458 12465949 ~ 12476564 (+) False tbc1d31
TU96107 other upstream 643501 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 736768 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 736768 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1531510 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1531593 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 407326 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 771443 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 1114736 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1780120 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1822358 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile