RNA id: TU96186


Basic Information

Item Value
RNA id TU96186
length 229
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G71989
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12487637 ~ 12487865 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCGACGCCGCAGCTGTGTAAGGATTGATTCGACATTCAAGacggttgtcttgccaatgaggatgtttgcctgtgatgttgatgaaattctctggtcagatccagctaggcgaagagataaagtctagtatttttctgtgtatttctgtgtatttttgtgattgtaacctgtactggataccgtattttatgtttgtctgttgtttgctgagctaacagtgttatgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96184 lncRNA upstream 880 12486475 ~ 12486757 (+) True G71987
XR_005639635.1 lncRNA upstream 115808 12370724 ~ 12371829 (+) True LOC120561687
TU96161 lncRNA upstream 134146 12353010 ~ 12353491 (+) True G71969
TU96153 lncRNA upstream 156675 12330068 ~ 12330962 (+) True G71961
TU96151 lncRNA upstream 211696 12273394 ~ 12275941 (+) True G71959
TU96198 lncRNA downstream 14646 12502511 ~ 12633773 (+) True G71995
TU96209 lncRNA downstream 30798 12518663 ~ 12520005 (+) True G72006
TU96221 lncRNA downstream 49445 12537310 ~ 12540551 (+) True G72018
TU96237 lncRNA downstream 106719 12594584 ~ 12596659 (+) True G72028
TU96245 lncRNA downstream 151449 12639314 ~ 12639789 (+) True G72036
XM_039805266.1 mRNA upstream 2725 12478898 ~ 12484912 (+) True LOC120561925
XM_039806899.1 mRNA upstream 11073 12465949 ~ 12476564 (+) True tbc1d31
XM_039806900.1 mRNA upstream 11073 12465949 ~ 12476564 (+) False tbc1d31
XM_039806901.1 mRNA upstream 13511 12465949 ~ 12474126 (+) False tbc1d31
XM_039805297.1 mRNA upstream 31721 12441914 ~ 12455916 (+) False LOC120561949
XM_039804996.1 mRNA downstream 56631 12544496 ~ 12546473 (+) True mrpl32
XM_039804997.1 mRNA downstream 60155 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804999.1 mRNA downstream 68077 12555942 ~ 12567664 (+) False sdha
XM_039804998.1 mRNA downstream 68077 12555942 ~ 12564798 (+) True sdha
XM_039804714.1 mRNA downstream 154074 12641939 ~ 12649833 (+) True LOC120561578
TU96107 other upstream 778128 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 871395 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 871395 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1666137 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1666220 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 272952 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 637069 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 980362 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1645746 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1687984 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile