RNA id: TU96237


Basic Information

Item Value
RNA id TU96237
length 689
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G72028
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12594584 ~ 12596659 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCACATTTTCAGAATGAGATTACTTGGATTTTGGCTGGGGGGACATTTTGCTCTGTGTATCCATGCACCAGTccataaagaataaaaacacatgagaaTCAAACTCACTGAGATGGAGTAGATGAGGGCAGCAATTCCAAGCGGAAAGCAGCAGCACAGCATGGTGAAGATGGAGTAGCACAAGTAGTCGTTAACTGGGTTAAGCAGCGGGCCTCGAGTCACGTACACTGTGGGCTGGACAGTGACGGTGGCCTGCTGTCCTGGGTACTGCTGACCTGGGTACTGCTGTCCTGGGTACTGCTGACCTGGGTACTGCTGTCCTGGGTACTGCTGACCTTGGTAAGGCTGTTGTCCATATCCTGCACCCCCATACTGTGGCGGAGGTGCATAGCCctgctgcggTTGTGGGTATGCCTGGCCGGGCTGTGGGTTCCCCGGGTACGGTTGGTCCTGGTAGGGCGGAGGTGGCGCGTGGCCCGTGGAAGTCTTCTCATCAGACCATCCCGATGGAGGAGCACTCGACTTACTGGGGTCCATAGTGCAAGAGTTTGTCTCTGTGCTTTCAGAATAAACAAATCTCTCTTTTTTAACCTCCGCACTCAAGTATTTCTGAAGTATTTATCGGTAAATGTCCAccgcctgttttttttttccacccctGCTGCTACAAGGTGAATTATCCCAGTTAC

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96221 lncRNA upstream 54033 12537310 ~ 12540551 (+) True G72018
TU96209 lncRNA upstream 74579 12518663 ~ 12520005 (+) True G72006
TU96186 lncRNA upstream 106719 12487637 ~ 12487865 (+) True G71989
TU96184 lncRNA upstream 107827 12486475 ~ 12486757 (+) True G71987
XR_005639635.1 lncRNA upstream 222755 12370724 ~ 12371829 (+) True LOC120561687
TU96245 lncRNA downstream 42655 12639314 ~ 12639789 (+) True G72036
TU96322 lncRNA downstream 121902 12718561 ~ 12729153 (+) False LOC120563165
XR_005639745.1 lncRNA downstream 164394 12761053 ~ 12770584 (+) False LOC120562335
TU96341 lncRNA downstream 181571 12778230 ~ 12778442 (+) True G72117
TU96356 lncRNA downstream 219478 12816137 ~ 12820820 (+) True G72129
XM_039804999.1 mRNA upstream 26920 12555942 ~ 12567664 (+) False sdha
XM_039804998.1 mRNA upstream 29786 12555942 ~ 12564798 (+) True sdha
XM_039804997.1 mRNA upstream 44626 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804996.1 mRNA upstream 48111 12544496 ~ 12546473 (+) True mrpl32
XM_039805266.1 mRNA upstream 109672 12478898 ~ 12484912 (+) True LOC120561925
XM_039804714.1 mRNA downstream 45280 12641939 ~ 12649833 (+) True LOC120561578
XM_039804718.1 mRNA downstream 62857 12659516 ~ 12676990 (+) True hpn
XM_039804720.1 mRNA downstream 62857 12659516 ~ 12676990 (+) False hpn
XM_039804717.1 mRNA downstream 62858 12659517 ~ 12676990 (+) False hpn
XM_039804719.1 mRNA downstream 62858 12659517 ~ 12676990 (+) False hpn
TU96107 other upstream 885075 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 978342 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 978342 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1773084 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1773167 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 164158 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 528275 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 871568 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1536952 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1579190 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00021511 True 792 processed_transcript 0.39 2 NC_007127.7 45140858 ~ 45144372 (-)