RNA id: TU96245


Basic Information

Item Value
RNA id TU96245
length 476
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G72036
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12639314 ~ 12639789 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAAATCCTGCTTGTGgggaaatgtatgtattgactaatgcgctgtagcaaagcgctaagtacttgtgctatgatacgactgagtgcagactgcgatattcccactgctgatgctatgactgtttgaaatgatcctgatgccaatatttgtaatgtagcggggagtttaacaactgctggaatggaatgtgaacgctgagtcggagattcaatgtcatctttgatttcttccagtaactgtaatattgtatggctgcttaatctgtaacgcttaatgatttcgttttcactcaactgaaaaagtgtgatcctttggggcaaaaatcctttcagctcgtctccttggcctatgtcttcgtcttgcttggattactgctgccatttcaccaggaggcatatgcgAGGAAACCCGCTTGCACCTGgattacacctgcttttaagaggcggagaattttcaccgcaaaatagaggcACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96198 lncRNA upstream 5541 12502511 ~ 12633773 (+) True G71995
TU96237 lncRNA upstream 42655 12594584 ~ 12596659 (+) True G72028
TU96221 lncRNA upstream 98763 12537310 ~ 12540551 (+) True G72018
TU96209 lncRNA upstream 119309 12518663 ~ 12520005 (+) True G72006
TU96186 lncRNA upstream 151449 12487637 ~ 12487865 (+) True G71989
TU96322 lncRNA downstream 78772 12718561 ~ 12729153 (+) False LOC120563165
XR_005639745.1 lncRNA downstream 121264 12761053 ~ 12770584 (+) False LOC120562335
TU96341 lncRNA downstream 138441 12778230 ~ 12778442 (+) True G72117
TU96356 lncRNA downstream 176348 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 186862 12826651 ~ 12883769 (+) True G72134
XM_039804999.1 mRNA upstream 71650 12555942 ~ 12567664 (+) False sdha
XM_039804998.1 mRNA upstream 74516 12555942 ~ 12564798 (+) True sdha
XM_039804997.1 mRNA upstream 89356 12548020 ~ 12549958 (+) True zmp:0000000930
XM_039804996.1 mRNA upstream 92841 12544496 ~ 12546473 (+) True mrpl32
XM_039805266.1 mRNA upstream 154402 12478898 ~ 12484912 (+) True LOC120561925
XM_039804714.1 mRNA downstream 2150 12641939 ~ 12649833 (+) True LOC120561578
XM_039804718.1 mRNA downstream 19727 12659516 ~ 12676990 (+) True hpn
XM_039804720.1 mRNA downstream 19727 12659516 ~ 12676990 (+) False hpn
XM_039804717.1 mRNA downstream 19728 12659517 ~ 12676990 (+) False hpn
XM_039804719.1 mRNA downstream 19728 12659517 ~ 12676990 (+) False hpn
TU96107 other upstream 929805 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1023072 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1023072 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1817814 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1817897 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 121028 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 485145 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 828438 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1493822 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1536060 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile