RNA id: XM_039807310.1


Basic Information

Item Value
RNA id XM_039807310.1
length 3213
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120563165
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12711602 ~ 12729226 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attcctcatggaggagacggaaactatgcactatagctttaacccacacacacaaacacacactcagtaATCTACAGTGCAAGCAGCAGTGCAGCACCAGCAAGTGTTACCTGGCTTGTTTGCAACTTTCGGGGGGGTTCACTGAGTGCCAACCCCTTATGCTTTAAGTTTTTTCTTGTTATATTATGGGAGAAATTCAGTATTCCTCCATCCTGACTGCTCCATGCACTTCCGGTATGTGCTGTAATCCACCACTGCAACCAGCACTGGCCTAACTTCATACAGTCAATACCACAGCATAAACACTACGACTGTGATTGAAGGGTAGAGATGGGTacagagaggagggaaggagagaaatatagacagaagagaagaagagagagtgtGATGAATGCTGACTCTAACATTGTGTAACGCTGAAAGATTATTCATTGTGCTATTAGTTTTCAGCAGCAGCTCACGGTTGCCAATCTACACAAAAGAGGCATACCAGCAGTGGCAGTTGGGTATAGAGTTTTCAATAATGCACTACTGAGGATTATAGACTTCATAGTTGAGTTTTACATAGGTTGTCAACCTTTAACCACTGCATAGTTGAAGCAGGAAACAAAATGTAAAGGTCAGCCAGTTCTTTGGAAATAAGAGTTAAGTCGCACAATCATGACTAATAAAACCCCAAAGACTGGAAGAAGGAAAAGCAGATTAGAGTTTGATGAAGGCTGTATAAAAGCTTTAGTAAAACTTGATTTTCCAAACTGCTAGAACAcctctacatacagtacacctgGTAATTTGTGTCTTTAGCTAGATAGATGGATCTCTTTCATTCTGTTCTGTCTTTCATTAGTTTTCTCCCACTCTTGTCTTTATTCCCCCCTCTGTCTTTGCTCCCTTTGCTGTCCGTTCtcattttttcttctctttcagaGGAAGACAGATTGTTAAAGGGAGTGTAAGTGAGTAAAGTAGCAGCTCCCCTACTATAAACCCCTGAGCCTCCCCTTCATCACAAAAACACTCCACACAAAAATTGGAGTCCCTTGAGGGCAGACCCTCCAGCGTCCCATCTTGTACAGATAAAAGGCTTCGGCCGTGGCTGAATAAACCCAGTTCCCGGCTTCAACCGCGAGCCCAGCCTGAACCGTccggcgctgctgctgcccgCCTCCCAGCATGCTGTCCAGGGACAAACGCAGCACAGACGCAGCCGAGGGACCCTCAGCGCTCAGAGGGAGGAGTGGAGGAGTCCTCCGGCCCTCCCACTGGCTATAAGACCAGGGGCAGACGGAAACACTCAGACGGCAGGCACACGTGGAGCAAAGAGGCAGGGAGCGAGAAGGACGTGGAGAGAGGCtgagagatagagggagagagaccaATAGAGAGCAAGAGCCAGTCAAACTGCTGCCACAGACGGGGAGTAGTTTTTGCTATTGGGATTGAAACAGACAAATATAGAAACAACGGACCAAAAAAGAGGTttagagaagaaaaagaggacaAAATCAACAGCCATTTGGCTTCGACGTGCCATTCTAAATTTGGGATTAACAGAAAGAAGAACTGACCTTTTGGGATGTGAAGTGTTTTGTGTAAACcaagagagaaaaacacagcagCTCTGAGGTCAAGTTGCTCTTGACCACTGACCTAAGGATCAACTCGCTGATCTTTTAAACCAAGCCTAACTCGTCATCATAAGGGCTACATCTGACTCACCTGGCTTGACTCATTTTGCAACCAAGAGAAGTTGGGGGGTAAAGTAATTTAAGCGGTGGGTGCCTTTTTAGTCAAAAGCATCAACAGAAAAATAGCTAAGCAACTTTCGATATCAAACTTGCAAACGTTACAAGTTGAACCTCGCCAAGTGGAAGTCTCACGAGGATTGACCAGCAGCTGACAGAACATTGTTTACGGTGAAGATGACGTTCGCCATGCTGCGCACGGCGCCTCCCGCAGGCCGCTTCTTGTACGGCGACATCGCTCTCCTCTCCGAAGACGACGATGAGAACGGGAGCGAGGGGTCGGGCTCCGAGGAGCGTACCACCAACTCCTCCAACTACCGCCTGTCCTCCTCTTCGCCATCTGCCTTTCACATCAAGGTGAACAGGAAGAGGAAGCTGTGCGGGGCAGGAGGGGGCGTAGGGGGGGATGTAGAGGCCATGATGGGGAGGCTCCTTCCCCAGGGGTCTCCCATCCTTGGGGAGGGTCGCCAGAGGACTGCAGCCAACGCGCGGGAGAGAGATCGCACCAATTCTGTCAACACGGCATTCACAGCGCTGCGCACACTCATCCCCACCGAGCCCGCAGACAGGAAGCTGTCGAAGATCGAGACGCTTCGTTTGGCCAGCAGCTACATCAGTCACCTGGGGAACGTCTTGCTCCTGGGCGAGGGGCTTCACGATGGACAGCCGTGCCACGCTCCCTCACCACCGTTCTTCCACGTGAACTCCTCCCCCAGCCGAGGATCTGACCAATCAGCTCAGCCAAAGCACATCTGTACTTTCTGCCTCAGCAACCAAAGGAAAATGAACAAAGACCGAGACAGGAAGACGGCCATCAGAAGTTAACAATGAGGACACAACCACACGGATGAAATGctcgtcactttgacagcgctTTCAGTGATCTTATACTACAACTTGAAGACTTTTCAGACTTGTGTTGCATTTCAAAGACTTATTGAAGGACTTCTTTAGCACTTCGAGGACTTTTCAAGGAACTTTCCAACCATTTCTTCTTATTGttttcttacttttcttttaatcactttttacttttttagagTGTTTTCAAATATGATTGAAAACATTTCTGAAAAGTTGAACAGTACTTTTAAGTGGCTATTACATGCTTATCAAGACCATGACGAACCTTTCAACAACATTTATGTATAAGCGACTTTTTACTGTATTGTTCAAAGACTCCGGGACTCGTTGGTCAGAGTCTAAGGAACTTATGGCACATGATCGAAAAACACACAGAaccttttgaaacaaaaaaatgtattcatcaaAAAGCTGTGGGTTATTaatgtgtaaactgaaatacaaatgtatatttatgtgaCATAACATTTATATAATGAAACTATGTTATTTAACCGGCATTGACATTCATAACAAATGATGTATAAAGGTGCAACAAATTGGCTATTGACACAATTTATgacatcacacaaaaaaaataaaaatacatgctGGAACTTTA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96245 lncRNA upstream 75129 12639314 ~ 12639789 (+) True G72036
TU96198 lncRNA upstream 81145 12502511 ~ 12633773 (+) True G71995
XR_005639745.1 lncRNA downstream 31827 12761053 ~ 12770584 (+) False LOC120562335
TU96341 lncRNA downstream 49004 12778230 ~ 12778442 (+) True G72117
TU96356 lncRNA downstream 86911 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 97425 12826651 ~ 12883769 (+) True G72134
XR_005639912.1 lncRNA downstream 119249 12848475 ~ 12850425 (+) False LOC120563130
XM_039804718.1 mRNA upstream 37928 12659516 ~ 12676990 (+) True hpn
XM_039804720.1 mRNA upstream 37928 12659516 ~ 12676990 (+) False hpn
XM_039804717.1 mRNA upstream 37928 12659517 ~ 12676990 (+) False hpn
XM_039804719.1 mRNA upstream 37928 12659517 ~ 12676990 (+) False hpn
XM_039804714.1 mRNA upstream 65085 12641939 ~ 12649833 (+) True LOC120561578
XM_039806042.1 mRNA downstream 44655 12773881 ~ 12777726 (+) True gapdhs
XM_039805267.1 mRNA downstream 50989 12780215 ~ 12782230 (+) True LOC120561926
XM_039807227.1 mRNA downstream 54593 12783819 ~ 12788550 (+) True tmem147
XM_039806508.1 mRNA downstream 73250 12802476 ~ 12807616 (+) True LOC120562668
XM_039806509.1 mRNA downstream 73389 12802615 ~ 12807616 (+) False LOC120562668
TU96107 other upstream 1005409 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1098676 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1098676 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1893418 10820295 ~ 10821500 (+) False G71743
TU95893 other upstream 1893501 10820295 ~ 10821417 (+) True G71743
TU96328 other downstream 31591 12760817 ~ 12773439 (+) True LOC120562335
TU96452 other downstream 395708 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 739001 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1404385 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1446623 14175849 ~ 14176627 (+) False LOC120562174

Expression Profile