RNA id: TU96341


Basic Information

Item Value
RNA id TU96341
length 213
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G72117
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12778230 ~ 12778442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATTCTCTGGTAGGAGACAttggtggatggatggagcaGCCACTAGAGGGAACCTTCAGCTGCCTCTTTTAGCAATGCATCAAGGCTGCATCCTAATATAGTAAAATTCTGCTTTTTCCTGCCTTGGCCAAATTACTccctccctaaaaggaagtgaCATAAAAAGCTTTGAAAATGTTTATAATCATTTTTGCTGCGGTGCCACCTGCTG

Function

GO:

id name namespace
GO:0021591 ventricular system development biological_process
GO:0021592 fourth ventricle development biological_process
GO:0030902 hindbrain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639745.1 lncRNA upstream 7646 12761053 ~ 12770584 (+) False LOC120562335
TU96322 lncRNA upstream 49077 12718561 ~ 12729153 (+) False LOC120563165
TU96245 lncRNA upstream 138441 12639314 ~ 12639789 (+) True G72036
TU96237 lncRNA upstream 181571 12594584 ~ 12596659 (+) True G72028
TU96221 lncRNA upstream 237679 12537310 ~ 12540551 (+) True G72018
TU96356 lncRNA downstream 37695 12816137 ~ 12820820 (+) True G72129
TU96363 lncRNA downstream 48209 12826651 ~ 12883769 (+) True G72134
XR_005639912.1 lncRNA downstream 70033 12848475 ~ 12850425 (+) False LOC120563130
TU96360 lncRNA downstream 70036 12848478 ~ 12851077 (+) True LOC120563130
TU96361 lncRNA downstream 70036 12848478 ~ 12851077 (+) False LOC120563130
XM_039806042.1 mRNA upstream 504 12773881 ~ 12777726 (+) True gapdhs
XM_039807312.1 mRNA upstream 49004 12711602 ~ 12729226 (+) False LOC120563165
XM_039805267.1 mRNA downstream 1773 12780215 ~ 12782230 (+) True LOC120561926
XM_039807227.1 mRNA downstream 5377 12783819 ~ 12788550 (+) True tmem147
XM_039806508.1 mRNA downstream 24034 12802476 ~ 12807616 (+) True LOC120562668
XM_039806509.1 mRNA downstream 24173 12802615 ~ 12807616 (+) False LOC120562668
XM_039806506.1 mRNA downstream 29639 12808081 ~ 12819134 (+) False LOC120562667
TU96328 other upstream 4791 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1068721 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1161988 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1161988 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 1956730 10820295 ~ 10821500 (+) False G71743
TU96452 other downstream 346492 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 689785 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1355169 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1397407 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1647352 14425794 ~ 14426180 (+) True G72506

Expression Profile