RNA id: TU96360


Basic Information

Item Value
RNA id TU96360
length 2088
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC120563130
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 12848475 ~ 12851077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATGCGATGGTACGACATTCACTAAGGACAAGGGGCAGCTCACAGAGGTCACCTGCGACAAAGCCCCCCTTACCAAACACGAAAAAAACCTGCCAGGTAGAGACCTGCACACTGTCGATGCGTGAGGCCAGAAACCGGAGAAACaggaaacaacaaataaaaataaaaaataaaagtgggaACCAGCAATGATAATGTATAGACAACAATTGAAGATATCAATCACTCAGTCTTAATAACCGACTCAGAACACTTAGCGACCGTTACATTTGACATTTGATCAAAACGGCCATGGGAAAAGTCAATCATCACTGAGAGACTGCAGGGGAAATACTGATGTTGTTGAGGTTTGTTAAAACTGGGCTGTTTCAGACGTCTGTGCTGTCGGAGTGAGAGGACAGTGGGTTGAAAACCTCTCAGCTTCCAGTTCACAGGAAGACTGACACAGGTAGGAGATGTGTGCTCTGATTTAGATCTAGCCTGAAATCGCCAGACCAAATCGCAAATGAATGAGCTCGCAGATTTGGCTGGTTCGCAGGCTAATTTAAATCAGTTCgaaatacattttacagggTAATCGTGATGTCTGTGTTTTACAACTTATTGGTGTTATAAATGAATCTTCAAATTGCTATTTTATAAAAGTCACAACAAATGTTTACCTTCTGCACGTTGAATGTTGAacacagacacttttttttatttttgctctttGTTAATCGTGGATATCCTATGTAATGCATTGACAacatttgtcatgttttttttttattgttattaactttttattaacatgcattgtGGCAGCTCTGATGGTTATGTTAGACTAAACATCTTATGTTTTCGGATGAAATAACACTATATCCTGATACTGACCagtattttaaataatttaaagggCATTTCAGCTTAAACTAATCCTATCTAACCTTTATATAATTATCATGCACTaatatgtattgtttttaaaccaTACATGAGAGGTATTTATCATGAGAGGCTTTGAACTTGAAGCCATATTTGACTTTGTAACCAGCTTTACTGTTTACTTTTTTGTGAAAGAACTTTATGGTTGGCAACTAACACACTGGCCACAGAGGGGATCTGTATGAGAACCTTCCTTCAAGTACCTGTAATAATAGGCGAGATGTAAAACATATATACACCTAACAAACTGACTGATGCTGTAagttattttgtatttactGAATAGtcatattaatatttacagtaatcAAATATCTTCAAGTGAAAATGTTTCAAGTCACACATTGCAGCTTTTTTGTTTAGAATATACTTTGACAAAAGTAGGTCATGTTTGCAAATGACTTGACCTTTTTAATGAAGTGTTTTGATATTGTTTATTGAACACTGTACATGGCTGTAAATACACTTGTTGTTACATCTTTGTGTTTGATAAAAACATGGACTGTACAACAGCTTTATGTCTTTTGTGCTTACCAAACGAATGtctattttttcattttagtaGTATATCGATCACAAACTCACAATGAAAAATGTTTTGGTCTTTCATGGCTGCACAAATTCTGAAAATCGGAATTACCTTGAAACAAATATACAACAGTCTAATACAGGCATAACATAACAACTGCTACAAACAACCACTACAAGCAGTAATGAAACAACAGTAACTAACATTGGCTCACAttcagacagaaagacaaactGCAAATTATTACAGTGGACTATAGGATTGTTTGTATGATTGGATTTGGATAATTCACACCGGATTTGCACATTTAACTTGAACTCTAAATTTCTAGAATTTCTGCCATGACGTCTCCTGCACCAGAAGTCACAAAAACCTTTGCATATTTTGGGTCCCAGttgtcaaatgctttcacatGTTGATAGCCATGCGTACTCATCAGGAGTATGATGGAACTGTTACAGCTCTTTTGCTGATGTTGGTCTTGCTCTGACATGAGTACAGGGAGGAAGTGGAGGGTTTGGTTCGCAGAGATGTCTGAGTCAAAGCTGAGTCAGACTATCATTAAAGACTGAGGGTGCGTGACACATTTTATCATTCACCTTTATAAAAATACCTGTTTGAAGGAGGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96356 lncRNA upstream 27658 12816137 ~ 12820820 (+) True G72129
TU96341 lncRNA upstream 70036 12778230 ~ 12778442 (+) True G72117
XR_005639745.1 lncRNA upstream 77894 12761053 ~ 12770584 (+) False LOC120562335
TU96322 lncRNA upstream 119325 12718561 ~ 12729153 (+) False LOC120563165
TU96245 lncRNA upstream 208689 12639314 ~ 12639789 (+) True G72036
TU96413 lncRNA downstream 45233 12896310 ~ 12945988 (+) True LOC120562936
XR_005639883.1 lncRNA downstream 45350 12896427 ~ 12945561 (+) False LOC120562936
TU96443 lncRNA downstream 261138 13112215 ~ 13120101 (+) False G72198
TU96444 lncRNA downstream 261138 13112215 ~ 13120101 (+) True G72198
TU96447 lncRNA downstream 268560 13119637 ~ 13124527 (+) True G72199
XM_039805269.1 mRNA upstream 18 12842761 ~ 12848460 (+) True ncam3
XM_039806506.1 mRNA upstream 29344 12808081 ~ 12819134 (+) False LOC120562667
XM_039806505.1 mRNA upstream 29344 12811913 ~ 12819134 (+) True LOC120562667
XM_039806504.1 mRNA upstream 29344 12813399 ~ 12819134 (+) False LOC120562667
XM_039806509.1 mRNA upstream 40862 12802615 ~ 12807616 (+) False LOC120562668
XM_039806881.1 mRNA downstream 681 12851758 ~ 12881403 (+) True mroh1
XM_039806880.1 mRNA downstream 681 12851758 ~ 12880840 (+) False mroh1
XM_039806879.1 mRNA downstream 1668 12852745 ~ 12881403 (+) False mroh1
XM_039806747.1 mRNA downstream 147073 12998150 ~ 13100469 (+) False ulk4
XM_039806750.1 mRNA downstream 147096 12998173 ~ 13100469 (+) False ulk4
TU96328 other upstream 75039 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1138969 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1232236 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1232236 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 2026978 10820295 ~ 10821500 (+) False G71743
TU96452 other downstream 273857 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 617150 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1282534 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1324772 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1574717 14425794 ~ 14426180 (+) True G72506

Expression Profile