RNA id: TU96444


Basic Information

Item Value
RNA id TU96444
length 1066
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G72198
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13112215 ~ 13120101 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGGTGAAATGACAGTCCATTTTATTGTTTCAGAACACAGCAGGCTACAGCAACCAGCTCCTCCCACTACCCCACCCATTAGTAACAGACCAATTGGagccctcctccccccccCCCCCAACCTTCCACAGCCACACCCATCCAGCTAGGTCAGCTACACCCCCCTTTGGAACAGCAGAGACACATCAGTGTCCACCTTAAAGCAAGAAAATAGCTTGATATTTGGACCATGATTTccaattcatgttttttttttttatacaaaagcTACACAATGTTACACTTTATCATCAGAATACAATTCAACTGATTAAATTTAGTGTTTGGACACCATTTAAAATGTGATCAGAGTCTTTACTTGGATGAAGCATTaccactaaaaaaaacaaactcaacacTACCAGAGACTTAAAATACAAGGGACTGCAAAAACAAGAGATGAATATCATAAttcagaatgaaaaaaaaagccagctAGAATCAGTTTGTACCATTATAGActtgaggggggaaaaaaaaaaaaaaagaataaaaaagtaaaacaatcaaatgagtaaaaatgaaaaaaagtacaTAAAGTGTTTTTCAAAAATCAACTGTTGAGATCAAAATCCATGTCATGTCAGGATTTGAAAGTCAGCCCTCCGTCAGGCTGAGACCAGAACCGCATTTAAATCTAGTTTGTCCCAATGGAGTTCCCATAGACAGGAAACTCTGCTTGCTGTTGTTGAGTCTTCCTCAGGCACTTTCTGAAACCCCGCCTCCTCCATATGGGCGAATCATGATGCAGGTTCATCCAGATCatatgatacagCTAGTAGAAAGTGTAGTGTAATGTTGGTCTTGGTATTTACAGGTCGGTATCAAACCAGGCCAGTTGGTTGGAGTCGCCAGGGGGCAGGCCCTCTATCAGTTCCTGGGCGTGTCCCAGGTCAGGCAGCCCCTCTACAGGGGGGTAGTCCTGGACCGGGTGGTGGACCCCACCCAAATCATGGTCCATCATGGGCTCCATACCCATCGAGTCCCCTCCGTAACCCCCCGAATGGAAGGAACGGTAGCTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96413 lncRNA upstream 166227 12896310 ~ 12945988 (+) True LOC120562936
XR_005639883.1 lncRNA upstream 166654 12896427 ~ 12945561 (+) False LOC120562936
TU96363 lncRNA upstream 228446 12826651 ~ 12883769 (+) True G72134
TU96453 lncRNA downstream 4833 13124934 ~ 13125539 (+) False G72204
TU96504 lncRNA downstream 88727 13208828 ~ 13209034 (+) True G72242
TU96524 lncRNA downstream 125617 13245718 ~ 13250107 (+) False hint3
XR_005639803.1 lncRNA downstream 325765 13445866 ~ 13448239 (+) True LOC120562636
TU96597 lncRNA downstream 351650 13471751 ~ 13473470 (+) True G72309
XM_039806749.1 mRNA upstream 11746 12998174 ~ 13100469 (+) False ulk4
XM_039804903.1 mRNA downstream 91478 13211579 ~ 13215355 (+) False cmtm8b
XM_039804904.1 mRNA downstream 91482 13211583 ~ 13215355 (+) True cmtm8b
XM_039804685.1 mRNA downstream 119013 13239114 ~ 13243225 (+) False LOC120561555
XM_039804684.1 mRNA downstream 119138 13239239 ~ 13243225 (+) False LOC120561555
XM_039804686.1 mRNA downstream 120366 13240467 ~ 13243225 (+) True LOC120561555
TU96328 other upstream 338776 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1402706 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1495973 11599037 ~ 11616242 (+) True G71896
TU96069 other upstream 1495973 11599037 ~ 11616242 (+) False G71896
TU95894 other upstream 2290715 10820295 ~ 10821500 (+) False G71743
TU96452 other downstream 4833 13124934 ~ 13125897 (+) True G72204
TU96598 other downstream 348126 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 1013510 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 1055748 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1305693 14425794 ~ 14426180 (+) True G72506

Expression Profile