RNA id: TU96524


Basic Information

Item Value
RNA id TU96524
length 1310
lncRNA type sense_over
GC content 0.39
exon number 4
gene id hint3
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13245668 ~ 13250110 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTCATTGTGCTGTTGTACAACAATGGCAGGAGTCAAGGCTACACAACCTGATCAGGTTTCCAAAACCAGCAGCGTGCCAGCTGAAGGATatgaaaagaaatgtattttctgCAAGATCGTAAACAATGAAATGGGCACGGAGCTTCTTCACTGTTGAAGCGGATGGTCGAGACAGGGAAGGAGATCCTCCAGAAAAACAGCGTAACAGACCTCAGCGATGTCAGGTTCGGTTTCCACTGGCCCCCATTCTGTTCTGTCACACACCTACACCTTCATGTCCTGGCACCTGCCAGTCAAATTGGCTTCATGTCCCGCCTCTTCTACAGGCTCAACTCTTATTGGTTTATTACGGCAGACCAGCTGATTGAGCTTCTCAACTCTAAAGGAGAGACCAACTAATCCCTCGCTTTGGATCCAGTTCTGACAGTACTTGACTTTGATGTGACTGAAACATCCACCTTCTTGCAGAGGTCATGTTGAATGATACACTCTCACATAAAGTTGCTGTCTGTGAGAGCTAATGACAGTATCTTGTTTCTTGCTACTTGCCACACACAAATgattttttaaacgttttttttacagaaggAGTTCATTAAATCTCAATTAATCctccgttaaaaaaaaaaaaaaagcatttactTTATGGACCACGTATAGCATACAGTTTGATTCCCCTGTTTTCATCTGGTAATCGCCAAAGAAATTGTTGAAGGGCGTTTCTTTTTACTGAATGGAAAGGTGAGTACAACAGTAGATAGCCAATATAATTCACAAGCTGTTTTATTTCCTGGCATGCAAAATGAAAATCAGATTGTATGCATGTGTAATTGAGAAAAAACTATAACTAAGAAAACCTAATTTGTCTAATTCAAATTTTGACATAACACGTTGGATAGTTGTGTACCGAAGGTTCCTCAGCTATGTTGAGTTATCTCATAATTTTGTGGCCTTGGTGAAGTGGGTCAAAGCCCAGAGTATTATTAACTATTTACAAGGCTCCTTTACAGTGGAAGCAGCTAAGTGATCCTCTAACACTGTAAAGTATGCTAAATGATCTCAACAAGCACTAAAATATAGCCAGGTATCTGTTTATACATGCTCATCTCACGTTTGATTTGATGCAATGTCCTAGGATTGTGTTAAGATATACAAGATGAACTAACTGTATTGTGCATGAAGTGAATATGCCATATGATACTACTGTATATTAAGGaatgtaaagacagaaaaccaaactgtatgtactgtacacaaGTGTATGCACTTTAAGAATTAATTTAACTTGGAATAAATAATACTTTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96504 lncRNA upstream 36684 13208828 ~ 13209034 (+) True G72242
TU96453 lncRNA upstream 120179 13124934 ~ 13125539 (+) False G72204
TU96447 lncRNA upstream 121191 13119637 ~ 13124527 (+) True G72199
TU96443 lncRNA upstream 125617 13112215 ~ 13120101 (+) False G72198
TU96444 lncRNA upstream 125617 13112215 ~ 13120101 (+) True G72198
XR_005639803.1 lncRNA downstream 195759 13445866 ~ 13448239 (+) True LOC120562636
TU96597 lncRNA downstream 221644 13471751 ~ 13473470 (+) True G72309
TU96603 lncRNA downstream 225263 13475370 ~ 13483111 (+) True G72314
TU96612 lncRNA downstream 282018 13532125 ~ 13533002 (+) True G72319
TU96607 lncRNA downstream 309653 13559760 ~ 13606245 (+) False LOC120562530
XM_039804685.1 mRNA upstream 2493 13239114 ~ 13243225 (+) False LOC120561555
XM_039804684.1 mRNA upstream 2493 13239239 ~ 13243225 (+) False LOC120561555
XM_039804686.1 mRNA upstream 2493 13240467 ~ 13243225 (+) True LOC120561555
XM_039804903.1 mRNA upstream 30363 13211579 ~ 13215355 (+) False cmtm8b
XM_039804904.1 mRNA upstream 30363 13211583 ~ 13215355 (+) True cmtm8b
XM_039806592.1 mRNA downstream 2590 13252697 ~ 13264092 (+) False trmt11
XM_039806591.1 mRNA downstream 2881 13252988 ~ 13264092 (+) True trmt11
XM_039806594.1 mRNA downstream 3085 13253192 ~ 13264092 (+) False trmt11
XM_039805216.1 mRNA downstream 145331 13395438 ~ 13411921 (+) True rspo3
XM_039805217.1 mRNA downstream 145331 13395438 ~ 13411921 (+) False rspo3
TU96452 other upstream 119821 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 472279 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1536209 11708453 ~ 11709509 (+) False LOC120561922
TU96068 other upstream 1629476 11599037 ~ 11616242 (+) True G71896
TU96598 other downstream 218120 13468227 ~ 13470450 (+) False prelid3a
TU96779 other downstream 883504 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 925742 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 1175687 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 1376371 14626478 ~ 14630463 (+) False LOC120561718

Expression Profile