RNA id: TU96612


Basic Information

Item Value
RNA id TU96612
length 413
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G72319
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 13532125 ~ 13533002 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACATTTATGAAAAGTCGGCGGCTTTTATTTACATTCAACAGGACTGGAGTATGCAAAAAATGCTCCAGCTGAAATACAAACAAGTCATCACTTCttaaattcaaattcagttttactGGAGGTACAAATCTCggaataaaaagtacattttcaaaCAGCTATTTACAACAGAGTACTGATGAAAACAACGCTCTCAAATTACTGCCAACAACATAACCCGTTCATCATTAACACATACATACGATGACacaggtttatttttttatttttttaaatactatgtCCGGTTGTTGTTTCTCTTTTGGTTCTGGATCTTTCTTCTCAGCATTGCGTCCTGAATCAGATCTGACTGTTTCACATCTGTATTCCCACAGCCCACCACAGGACAGCGGCATTTCTTTTTCTGGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96603 lncRNA upstream 49014 13475370 ~ 13483111 (+) True G72314
TU96597 lncRNA upstream 58655 13471751 ~ 13473470 (+) True G72309
XR_005639803.1 lncRNA upstream 83886 13445866 ~ 13448239 (+) True LOC120562636
TU96524 lncRNA upstream 282018 13245718 ~ 13250107 (+) False hint3
TU96504 lncRNA upstream 323091 13208828 ~ 13209034 (+) True G72242
TU96607 lncRNA downstream 26758 13559760 ~ 13606245 (+) False LOC120562530
TU96663 lncRNA downstream 154587 13687589 ~ 13688485 (+) False LOC120562711
TU96714 lncRNA downstream 508886 14041888 ~ 14046049 (+) False LOC120561928
XR_005639660.1 lncRNA downstream 553601 14086603 ~ 14087796 (+) True LOC120561831
TU96799 lncRNA downstream 630534 14163536 ~ 14163744 (+) True G72466
XM_039805705.1 mRNA upstream 60609 13468211 ~ 13471516 (+) True prelid3a
XM_039805214.1 mRNA upstream 113673 13414324 ~ 13418452 (+) True LOC120561886
XM_039805216.1 mRNA upstream 120204 13395438 ~ 13411921 (+) True rspo3
XM_039805217.1 mRNA upstream 120204 13395438 ~ 13411921 (+) False rspo3
XM_039806594.1 mRNA upstream 268033 13253192 ~ 13264092 (+) False trmt11
XM_039806252.1 mRNA downstream 33149 13566151 ~ 13606167 (+) True LOC120562530
XM_039806811.1 mRNA downstream 76616 13609618 ~ 13621344 (+) True LOC120562882
XM_039806562.1 mRNA downstream 91446 13624448 ~ 13688514 (+) True LOC120562711
XM_039805270.1 mRNA downstream 221051 13754053 ~ 14046136 (+) True LOC120561928
XM_039805112.1 mRNA downstream 525638 14058640 ~ 14068948 (+) True zgc:110410
TU96598 other upstream 61675 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 406228 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 758686 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 1822616 11708453 ~ 11709509 (+) False LOC120561922
TU96069 other upstream 1915883 11599037 ~ 11616242 (+) False G71896
TU96779 other downstream 600609 14133611 ~ 14144296 (+) False cmc1
TU96805 other downstream 642847 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 892792 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 1093476 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 1493580 15026582 ~ 15026653 (+) True trnae-cuc_16

Expression Profile