RNA id: XM_039805546.1


Basic Information

Item Value
RNA id XM_039805546.1
length 1082
RNA type mRNA
GC content 0.41
exon number 4
gene id cmc1
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14133584 ~ 14144296 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTACGCTGCCTAACTGCGTCAGCGGAAGTATTTTGAATGTACGTAAGCTACTGTAGGTCACATTTGTTTTGAGACACATTACCACAATGGAGGCAGCTAGCACAGAGGAGATCCAACTGAGGCATGTGGAGAAAGATGTCCTTATCCCCAAAATGATGAGGGAGAAAGCCAAGGAGCGCTGTGCTCAGAAAGTTGAAGCCTTCAACCACTGCTGTAAAGAGACTGGTTTCTTAATGGTGTTTAAGTGTCGAGAGGAGAATGCAGCACTGAAGGAATGTCTGACAATACACTACAAGGACCCTGCGTTCTTCGAGCTGTGTAAGCAGGAGTACATCCAAGAGAAGCTGGAGTTTGAGAGGACAGGGGTCCCAACAAAGAACAGGAAACAAAAAGTCCCAACTAGCATGTAATGAATGACACGACACCCAAACAACTTCCCTGGTGCAGAGTGTGAGCCAGAACCAGCACCAATTCCTACAGACCCAGAACACATGGTCATCTGGCAGGGCTTATAAATTTTAAAGGCACAAGCCTgtgtatttaatttaaatatgtgGAGTGACTAAAACTGGTTTGGTGTGCAAGAGTggaatataatttaaaaaagtctATTTTTTGGTTCTGTATATTTGCAAAATGTTCTCCATCAGATGGCCAACATGATCTTCTTATCAGCATTTGCATTACATTTACCAATGAGCTTATTGATTGATAGAATATGTTGATCTGATCATACAGTCCCCTCCTGTACCTAAAGCCAGAAGATCTTCTTTAGAGTGCAGAGCTTTAGCTTCAGATGTGTACGATCAAATTGAGGGATGTTCAATATCTGCTGaacactttgttgtgtctgtgtgtctttggtaATGAAGAGTCCTGTTTGTTGCCTTTGCTTGGGCCAACAGTTCTGGTAAATCATCTGCACAAGAAAGTAGAAGGCCTCCtttaacaaatttttttttccaagagaCACTCATGCACTATATGTACGAGAGCTCTGACTAAGCAATGAACCATGTGTGGTAATGTGACATATGCAATGAATTGTGACattgtaaataaaaatattcagTAGCAGTA

Function

GO: NA

KEGG:

id description
K18171 CMC1; COX assembly mitochondrial protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639660.1 lncRNA upstream 45788 14086603 ~ 14087796 (+) True LOC120561831
TU96714 lncRNA upstream 87535 14041888 ~ 14046049 (+) False LOC120561928
TU96663 lncRNA upstream 445099 13687589 ~ 13688485 (+) False LOC120562711
TU96607 lncRNA upstream 527339 13559760 ~ 13606245 (+) False LOC120562530
TU96612 lncRNA upstream 600582 13532125 ~ 13533002 (+) True G72319
TU96799 lncRNA downstream 19241 14163536 ~ 14163744 (+) True G72466
TU96813 lncRNA downstream 223971 14368266 ~ 14370091 (+) False LOC120562174
TU96863 lncRNA downstream 370372 14514667 ~ 14517897 (+) True G72520
TU96909 lncRNA downstream 459689 14603984 ~ 14604638 (+) True G72551
TU96919 lncRNA downstream 488785 14633080 ~ 14633375 (+) True G72559
XM_039805112.1 mRNA upstream 64636 14058640 ~ 14068948 (+) True zgc:110410
XM_039805270.1 mRNA upstream 87448 13754053 ~ 14046136 (+) True LOC120561928
XM_039806562.1 mRNA upstream 445070 13624448 ~ 13688514 (+) True LOC120562711
XM_039806811.1 mRNA upstream 512240 13609618 ~ 13621344 (+) True LOC120562882
XM_039806252.1 mRNA upstream 527417 13566151 ~ 13606167 (+) True LOC120562530
XM_039805720.1 mRNA downstream 31522 14175817 ~ 14367261 (+) False LOC120562174
XM_039805721.1 mRNA downstream 31522 14175817 ~ 14367261 (+) False LOC120562174
XM_039805722.1 mRNA downstream 31522 14175817 ~ 14367261 (+) False LOC120562174
XM_039805723.1 mRNA downstream 93645 14237940 ~ 14368419 (+) True LOC120562174
XM_039805719.1 mRNA downstream 93646 14237941 ~ 14367261 (+) False LOC120562174
TU96598 other upstream 663134 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 1007687 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 1360145 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 2424075 11708453 ~ 11709509 (+) False LOC120561922
TU96069 other upstream 2517342 11599037 ~ 11616242 (+) False G71896
TU96805 other downstream 31554 14175849 ~ 14176627 (+) False LOC120562174
TU96848 other downstream 281499 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 482183 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 882287 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 1409169 15553464 ~ 15555952 (+) False irx4a

Expression Profile