RNA id: XM_039805720.1


Basic Information

Item Value
RNA id XM_039805720.1
length 2551
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC120562174
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14175817 ~ 14370091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACCCTGAGAAGTTTTAGTTGTGTTTGCTGGAGTAGACTTGCCTTTCTCAGAGCCCGTTTATTCGAAATACGACATGGACAACTGTACAAACGTAAAGAAGTGTCAGCGTTCAAGGGTGTGGGAAAAGTTTGCTCCATTATCCCAGAATAAGGTTCGGTGTTTACTGTGCCAACAAGAACTGGCATACATCAATACCTCTACAATGTTGAGGCACCTCCgtacaaaacacacagcagcagcagcagcagcagcagcagcaacatccAGTGCTCCGCCCAGCGACAACATTCAAGGCAGTGTTAATTCATTTGGAAGGAACACGCACCAAACTGGGCGAAAGGATATCACTAGCGGTCCTCACTCCTTGCAGAAATCACCTTGATCGCCACGCTTTATCACTTTATATCCTTTAAAATGTCACCTAATTCAAACACAAtgctcactcacatacacctgTACGTAATTCTACGTAGCGGTAGAATGGGGCATTGTTGCTGCAGTTTATTGAATCCATATTTAGCCTAATTAAACATAGGCTACTTACATTCAAATCCTGATCAcagtattattatattataatgttatattCAAACATAGGCATTATATTTTTCATTCAGTCATGTCATGTTCATGTCATTTAATTCAAGTTCAGTCATGTCATGccatatgcatgcatgtgtccaTTCTGTCTCTCCTATGTTCCTGTTGTAAGCTTTGTTTGGCGGTGTCGAGTTCATTTCTGCTGACCACCAGATGTCACTGTGTTGTCTTCGATGCTTTGATGCTGCGGATCATTTTGAGATACAGTCAGGAAGAAGCTTCAGAGGCTTCGCAAGGCTTCGTTTGCCCATCACTAAATGATGTCACTGGAAATTTCAACAGGAAGTGCACCAACGTGTCTTCCTGGTTGCATCTTCAGAACTAGAGACTttccatagaaataaaatggGAGTCAAACCCTGTGCTTTGGCTGTTGAGGGAGCTGCAAAGATCAGTGACATGACATGTGAAGAGGCACCCGAGATCTGCATCTTAAAGACTCGCGAGTTGTTGTTAAAGGCTCAGCTCCTGATGTATGATATAGAGGAACTTCTGGACTGTTGTACATCAGCAGGCCCCTGCAACCAGAGACGGTGCAGAACGattcagcaggagTGTCAGGCCAGTATAGAGGAGGACGGAGAGACCTTGATCATAGAGGGCTTCAGGTTTGAGAGTGCGGTCAGCAGGGAGGACTGGCTGAAATCACAGACTGGTGGAAGAGGAGGATGCCAGGGCGACACTTGAgtgatggctaccttagtggtTTCATCCCACAATGTCAACAAGGCCAAACGACTGGCAGAGCAGTCCTATGCTCCTCCCCCTCCGCCCATGGCTCCGCCCAGCCCTGGCAccacaggaggaggaggtggtggtggtggaggaggaggtcaTGGAGGAGGGCTAGTGGAGCAGCTTAGTAAGACCAACCTGTACATCAGAGGCCTTCCGCCTGCCACCACCGACCAGGACCTCATCAAACTCTGCCAGCCatATGGGAAGATTGTGTCAACAAAGGCGATCCTGGACAAGAACACCAACCAATGCAAAGgctATGGCTTTGTGGACTTTGACAGCCCTGCTGCAGCCCAGAAGGCTGTGGCCTCACTCAAAGCCAGCGGAGTCCAGGCACAGATGGCGAAGCAACAGGAGCAGGACCCCACCAACCTTTACATCTCGAACCTGCCACTGTCCATGGATGAGCAGGAGCTGGAGAACATGCTGAAGCCCTTTGGTCATGTCATTTCCACGCGGATACTGAGGGACGCCAATGGCCTGAGCAGAGGAGTCGGCTTTGCTAGGATGGAGTCGACAGAGAAGTGCGATGTGGTGATTCAGAATTTCAACGGGAAATTCTTGAAAACCCCTCCAGGCATGACAGCCCCTGCAGAGCCGTTGCTGTGCAAGTTTGCTGACGGAGGCCAGAAGAAGAGGCAGACCCAGGTCAAGTATCCCCAGAATGGCCGACCGTGGACACGGGATGGAGAGAGTGGTATGGCGTTGACGTATGATCCCACAGCGATGCAGAATGGGTTCTACTCTTCTCCATACAGCATCTCCACCAATCGGATGATTGCACAGACGTCAATCACACCCTTCATCGCTGCCTCTCCCGTCTCCACATATCAGGTTCAGAGTACATCTTGGATGCCACATCAACAGTATGTTATGCAACCTACAGGTGCTGTGATCACCCCAGCAACGGCTCTAGAGCCCAGTTTGTCTCTTCACCCCTCCAGTGTAATGGCTCCTCTCACCCAGCAGATGAACCACCTGTCTCTGGGCACCACAGGCACCAAACCACAAAGCCACACACATGGAAATTGCCTTTTTCTGTTTGCTGAAATGTGCGATGACCCTGGGACCAAGCCAAACTATTATGTAATGTATTGTAAAGTGTCACAAAACCACATGCCTCCGCAAGAATGTCAGACAGTACTTTTAATCCAGATATTCTAAAGGACAAATTTTCTGCGCCTACATTATAATactgtctgtatctctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96799 lncRNA upstream 12073 14163536 ~ 14163744 (+) True G72466
XR_005639660.1 lncRNA upstream 88021 14086603 ~ 14087796 (+) True LOC120561831
TU96714 lncRNA upstream 129768 14041888 ~ 14046049 (+) False LOC120561928
TU96663 lncRNA upstream 487332 13687589 ~ 13688485 (+) False LOC120562711
TU96607 lncRNA upstream 569572 13559760 ~ 13606245 (+) False LOC120562530
TU96813 lncRNA downstream 1005 14368266 ~ 14370091 (+) False LOC120562174
TU96863 lncRNA downstream 147406 14514667 ~ 14517897 (+) True G72520
TU96909 lncRNA downstream 236723 14603984 ~ 14604638 (+) True G72551
TU96919 lncRNA downstream 265819 14633080 ~ 14633375 (+) True G72559
TU96920 lncRNA downstream 266916 14634177 ~ 14635023 (+) True G72560
XM_039805546.1 mRNA upstream 31522 14133584 ~ 14144295 (+) True cmc1
XM_039805112.1 mRNA upstream 106869 14058640 ~ 14068948 (+) True zgc:110410
XM_039805270.1 mRNA upstream 129681 13754053 ~ 14046136 (+) True LOC120561928
XM_039806562.1 mRNA upstream 487303 13624448 ~ 13688514 (+) True LOC120562711
XM_039806811.1 mRNA upstream 554473 13609618 ~ 13621344 (+) True LOC120562882
XM_039804763.1 mRNA downstream 216774 14584035 ~ 14588452 (+) False LOC120561614
XM_039804762.1 mRNA downstream 217552 14584813 ~ 14588452 (+) True LOC120561614
XM_039804764.1 mRNA downstream 217552 14584813 ~ 14588452 (+) False LOC120561614
XM_039804910.1 mRNA downstream 222982 14590243 ~ 14593984 (+) True si:cabz01093077.1
XM_039804909.1 mRNA downstream 222982 14590243 ~ 14593984 (+) False si:cabz01093077.1
TU96779 other upstream 31521 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 705367 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 1049920 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 1402378 12760817 ~ 12773439 (+) True LOC120562335
TU96107 other upstream 2466308 11708453 ~ 11709509 (+) False LOC120561922
TU96848 other downstream 58533 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 259217 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 659321 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 1186203 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1651098 16018359 ~ 16072201 (+) True G72750

Expression Profile