RNA id: XM_039805723.1


Basic Information

Item Value
RNA id XM_039805723.1
length 2661
RNA type mRNA
GC content 0.54
exon number 13
gene id LOC120562174
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14175817 ~ 14370091 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagggagggaggagcgTAGCTGCGCTGAAGCCGAGCCCCTCTATGCCTCAGCACGCAGAGTGGAGCAGACGGCAgcagccacacaaacacactccacacaccaccaccaccactgccgccaccaccacacacacacacgcacacacatagtgACGGCTGCCAGGCGCAGTGGGAAGCAAGCCGTCAGGGAGAGCTTGAGAAGAAAGAGGGGGATCACAGAggggaagagaagaaaagagttgGAGGAGGAACCTTGTGGATCAGAAGGGATTTTCCTCTGTGTGAGTGCGTGTCTAGATAGGACTATCTGCTTCTTCCTGAGCGAGAGGAGTTTTTACGgaggctttttcttttttgctcatCCTCCACGCCGGGCTTCAGCgatatctacctatctatcccCGGAGCTTAAcaaaagagggagggagtgtgagagagagagtgagaagaaAGGCACTCACAGCTTCAGCTCCAGaccaccctctctcctcctcatcgtcctcctctcctctctttctcgctCCACATCCATGTGTGAGTTAATCACTGATTTCACTGTCTATTGAGGATAGAAGCAGAGGACAGCGTGTGTTCCCCAGGATACAGCCGAGCTCCCGGTGGGATCTGGGTCTCGTctggtgtgagagagagagagagagagggagcaagAACGAGACAGGGAAACGGATTCacaagaagagagaaagagagagacaagagtaAGAGACGCTGGAACGCAAATTGAGGGGCATGTTCAGGGCAGCAGAGAGAGTCTGATTTTTAGAGCCGAGTGCAAGGAACCGGCAACCGGATcccatccatccctccctcctcatcctcttcttcttcttcttccctctccctttaccctctctctgtcctgctcTTCAATTCCCCCTATTGTTTCCTGTGTTGCCTCCTGCTATCCTACCCTCCTATCTTCCTTTCCTCACCTCCTTCTCCCCCAACCCCTTTTTTGCTGCCACTCCGGattctctctacctctctttccagacctgtctctctttgtgAGGTTCCCCGTGAGCTCCCAGACAAGTAGACAGACTGAAATCCCAAGTACTATCTGTTCCTCCTATCCCTCCATTGCTCTGTGcgtttatcacacacacacacacacacacacacgtacacacacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacagctcagtaAGAGGAGAAGCTTCTCTCTCTGCATCCTCCACTTTCGGACACAGCCGTCTGAAGGATCCAGGCCAGCCCCTCTGAGTGATTGTACCCCACCTGCGAGCTTCTATCTCCAGCCTCCAGGACCTTCAATTGGATTCCAGCTACATGGGAAAACGTTTGGAGCAGCAGCCAATGTACCCCCACTGCACCTACTACTACCCCCACTATCTCCAGACCAAGCAGTCCTATGCTCCTCCCCCTCCGCCCATGGCTCCGCCCAGCCCTGGCAccacaggaggaggaggtggtggtggtggaggaggaggtcaTGGAGGAGGGCTAGTGGAGCAGCTTAGTAAGACCAACCTGTACATCAGAGGCCTTCCGCCTGCCACCACCGACCAGGACCTCATCAAACTCTGCCAGCCatATGGGAAGATTGTGTCAACAAAGGCGATCCTGGACAAGAACACCAACCAATGCAAAGgctATGGCTTTGTGGACTTTGACAGCCCTGCTGCAGCCCAGAAGGCTGTGGCCTCACTCAAAGCCAGCGGAGTCCAGGCACAGATGGCGAAGCAACAGGAGCAGGACCCCACCAACCTTTACATCTCGAACCTGCCACTGTCCATGGATGAGCAGGAGCTGGAGAACATGCTGAAGCCCTTTGGTCATGTCATTTCCACGCGGATACTGAGGGACGCCAATGGCCTGAGCAGAGGAGTCGGCTTTGCTAGGATGGAGTCGACAGAGAAGTGCGATGTGGTGATTCAGAATTTCAACGGGAAATTCTTGAAAACCCCTCCAGGCATGACAGCCCCTGCAGAGCCGTTGCTGTGCAAGTTTGCTGACGGAGGCCAGAAGAAGAGGCAGACCCAGGTCAAGTATCCCCAGAATGGCCGACCGTGGACACGGGATGGAGAGAGTGGTATGGCGTTGACGTATGATCCCACAGCGATGCAGAATGGGTTCTACTCTTCTCCATACAGCATCTCCACCAATCGGATGATTGCACAGACGTCAATCACACCCTTCATCGCTGCCTCTCCCGTCTCCACATATCAGGTTCAGAGTACATCTTGGATGCCACATCAACAGTATGTTATGCAACCTACAGGTGCTGTGATCACCCCAGCAACGGCTCTAGAGCCCAGTTTGTCTCTTCACCCCTCCAGTGTAATGGCTCCTCTCACCCAGCAGATGAACCACCTGTCTCTGGGCACCACAGGCACCTACATGCCTGCTGCAGCAGCTGGTCCTATGCAAGGAACCTACATTCCCCAGTACACTGCAGTGCCTAAAGCTTCATATCTGACTTGTTTCTGGTGTCAGGGCATGGTGACAGACCCATCTTCGCAGACAGCCGCCCCCTCCTCCCAGGACGCCAGCGGGCAGCAGCCTTTAACAGTGGAGAATACAGGAGATCATGCCACAGCCTACTCTTACCAGCAGTCGAAGTGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K24990 RBMS; RNA-binding motif, single-stranded-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96799 lncRNA upstream 74196 14163536 ~ 14163744 (+) True G72466
XR_005639660.1 lncRNA upstream 150144 14086603 ~ 14087796 (+) True LOC120561831
TU96714 lncRNA upstream 191891 14041888 ~ 14046049 (+) False LOC120561928
TU96663 lncRNA upstream 549455 13687589 ~ 13688485 (+) False LOC120562711
TU96607 lncRNA upstream 631695 13559760 ~ 13606245 (+) False LOC120562530
TU96863 lncRNA downstream 146248 14514667 ~ 14517897 (+) True G72520
TU96909 lncRNA downstream 235565 14603984 ~ 14604638 (+) True G72551
TU96919 lncRNA downstream 264661 14633080 ~ 14633375 (+) True G72559
TU96920 lncRNA downstream 265758 14634177 ~ 14635023 (+) True G72560
TU96921 lncRNA downstream 269451 14637870 ~ 14640768 (+) True G72561
XM_039805546.1 mRNA upstream 93645 14133584 ~ 14144295 (+) True cmc1
XM_039805112.1 mRNA upstream 168992 14058640 ~ 14068948 (+) True zgc:110410
XM_039805270.1 mRNA upstream 191804 13754053 ~ 14046136 (+) True LOC120561928
XM_039806562.1 mRNA upstream 549426 13624448 ~ 13688514 (+) True LOC120562711
XM_039806811.1 mRNA upstream 616596 13609618 ~ 13621344 (+) True LOC120562882
XM_039804763.1 mRNA downstream 215616 14584035 ~ 14588452 (+) False LOC120561614
XM_039804762.1 mRNA downstream 216394 14584813 ~ 14588452 (+) True LOC120561614
XM_039804764.1 mRNA downstream 216394 14584813 ~ 14588452 (+) False LOC120561614
XM_039804910.1 mRNA downstream 221824 14590243 ~ 14593984 (+) True si:cabz01093077.1
XM_039804909.1 mRNA downstream 221824 14590243 ~ 14593984 (+) False si:cabz01093077.1
TU96805 other upstream 61313 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 93644 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 767490 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 1112043 13124934 ~ 13125897 (+) True G72204
TU96328 other upstream 1464501 12760817 ~ 12773439 (+) True LOC120562335
TU96848 other downstream 57375 14425794 ~ 14426180 (+) True G72506
TU96917 other downstream 258059 14626478 ~ 14630463 (+) False LOC120561718
unassigned_transcript_349 other downstream 658163 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 1185045 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1649940 16018359 ~ 16072201 (+) True G72750

Expression Profile