RNA id: XM_039804933.1


Basic Information

Item Value
RNA id XM_039804933.1
length 2231
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC120561718
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14626478 ~ 14632721 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcaatcattcccaatcttgcagacgGAGAACGTCTACATACTCCAAAGgaaGCTCGCCATGGCTACAACCATCCCTGCTGTTGTTGCTTTCAGTGGAATAAATACAAATCCAAAAGACTTACCAAGATCTACTACAGCACCCTTCACTAGTAGCATCACTGTAAGCTTCCCAGAATACTACAGTTACTATGACTACCCTGAGGGTGACTTCGGGAGGTGTGTGTATGAGCGGTATGGGGCCAATTTTATTCCCACCCTCTACGCCAGTTTCTTCCTCCTGGGCCTTCTGGGTAACTCTTTGGTCATCTGGGTCATTGCTTGTGGCGTGCGACTCCGCAGCATGACCGACGTGTGCCTCCTAAACTTGGCTGTTGCTGACCTTCTCTTGGTGTGTACCCTTCCCTTCCTTGCCCACCAAGCCCGGGACCAGTGGCTGTTTGGGGATGCTATGTGCAAAGTGGTCCTTGGTATTTATAATATAGTTTTTTACAGTAGGATCTTCTTCATCACTCTAATGAGCATTGACCGGTACTTGGCTATAGTACAGGCCATTTACGCTATGAGAGTACGGACAAAGTCCTTTGGAATGATCGCAGCGGCTGTTACATGGGTGGCTGGATTTTTGGCTTCTTTCCCTGAAATGATCTTCCTCAAAGAGCAGCCTGGTGTGAATACTAATATGACTCAGTTTTTCTGCTACCCTGTATATCCCACAGCAACTTCGAATGATGCCACCACTTCATCCAACTCTCACATCTGGAGCATCTTcagcctttttaaaatgaactttttggGTCTATTTGTCCCGGTAGTCATCATGGGTTTCTGCTACTCACAGATTGTCTGGAGGCTGCTGCACAGCCCGTCATCCAAGAAACAAGCCATCCGTTTAGTGCTCATAGTGGTAGTTGTTTTCTTCTGCTGCTGGATCCCCTACAACATTGCATCCTTCTTCAAAGCACTGGAGCTATTGCACATCTATACAGAATGTGAAAGCAGCAAAGCCATCAGATTGGCTTTACAAGTCACTGAGGTCATTGCCTACTCTCACAGCTGCCTCAACCCCAtcctgtatgtgtttgttgggGAGAAGTTCAGGAGGCACCTGCTAAGGTTGATAAACAGGGCTCCCTGCAGGCTGTGTCAGATGGTCAAAGCCTGCATACCCCAGGACAGAATCAATGGGTCAGTCTACTCACAGACCACCAGCCTGGGCGAGAGGAGCACTGCTGTGTAAAGTGTGTTCCATAGACGGTATAAAGaGAGACAAACTCAGATGCTGACCAGTTCCTTGCATTCAGTCAGGCCAAAACACCATTAAGAGAAGTGAAACAAATAGCtaatagctaaaaaaaaaagtgcagctgGAAACCTAAGTATTGTAAGTTTCAAAGCATCTGTAATAGCAGATGTGCACCTCACCTCAACCTAGAGAAAACCACAACATGATAGAAGCGGAAGTATATGTTATCAGTTTAATCTTTGCAGTCTCTGTGCACAAATTAGCATTTTGCTGTCAAATTTTGGAAATATCTCTGCAAAATTTCTAATGAGATTAATCAGCacttcaccaaaacaagtcatTTTCAAATCATTATACTCTATATTCTATCATGCAGACTGACTAGCCATGTGAATAATATGCATACCATATCTTAACTGCAACATCCTTGGTTTCATTCAAGTTGACCACCTTTGTTGCACGtcatcccctcctcctcccctcccccccccctctctcaagGCATTTTCTTACTGTAGCCCACATAATggcaaaatgccaaaaataatgaagtgaaaaaaaactCAGAGCCAAGACATGCAACTGTTTTCACACCCTACGGTCTAACCTTCAGTAATAAACTGACTTTGACATGTAAAATTGGTGAAGTGCCCCTTTAAAAGTACACATTCTCATTAATGACAGTAGTATACTGGTCGAAAACCCACCTGAATTTACGGAGTGGCCCCTAAATGCTAGTGCAGTCAGTAAGGCAAACCATCATTTCTAGGTGGGGCAGTTTCAAAATTTTCATTGGCTAAATTTAGAACTGCAAAAATGAATCAATTTGTTGTCAACTGTTACAGTAATCACCACCTATTTGATTTCAGcatctgcacgtagcctagttgggcctactgtaggtttggtgtataaatgtagtatattaaaatgcaattaggtcgagcagacagtccgaaacattgtAAGCTCGCCTCGCCGacaact

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004950 chemokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96909 lncRNA upstream 21840 14603984 ~ 14604638 (+) True G72551
TU96863 lncRNA upstream 108581 14514667 ~ 14517897 (+) True G72520
TU96813 lncRNA upstream 256387 14368266 ~ 14370091 (+) False LOC120562174
TU96799 lncRNA upstream 462734 14163536 ~ 14163744 (+) True G72466
XR_005639660.1 lncRNA upstream 538682 14086603 ~ 14087796 (+) True LOC120561831
TU96919 lncRNA downstream 359 14633080 ~ 14633375 (+) True G72559
TU96920 lncRNA downstream 1456 14634177 ~ 14635023 (+) True G72560
TU96921 lncRNA downstream 5149 14637870 ~ 14640768 (+) True G72561
TU96925 lncRNA downstream 11655 14644376 ~ 14645788 (+) True LOC120562067
XR_005639683.1 lncRNA downstream 12120 14644841 ~ 14645241 (+) False LOC120562067
XM_039804766.1 mRNA upstream 6597 14611912 ~ 14619881 (+) True LOC120561617
XM_039804768.1 mRNA upstream 6597 14616417 ~ 14619881 (+) False LOC120561617
XM_039804767.1 mRNA upstream 6597 14617190 ~ 14619881 (+) False LOC120561617
XM_039805273.1 mRNA upstream 18574 14603952 ~ 14607904 (+) True LOC120561930
XM_039804906.1 mRNA upstream 22795 14600889 ~ 14603683 (+) False LOC120561707
XM_039805511.1 mRNA downstream 70702 14703423 ~ 14704824 (+) True LOC120562066
XM_039806393.1 mRNA downstream 129649 14762370 ~ 14874113 (+) True dnah5
XM_039806394.1 mRNA downstream 129783 14762504 ~ 14872839 (+) False dnah5
XM_039806395.1 mRNA downstream 153823 14786544 ~ 14872839 (+) False dnah5
XM_039806960.1 mRNA downstream 775457 15408178 ~ 15414047 (+) True irx2a
TU96848 other upstream 200298 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 449851 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 482182 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 1156028 13468227 ~ 13470450 (+) False prelid3a
TU96452 other upstream 1500581 13124934 ~ 13125897 (+) True G72204
unassigned_transcript_349 other downstream 393861 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 920743 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1385638 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 2735982 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 2816864 17449585 ~ 17452568 (+) True G73031

Expression Profile