RNA id: TU96921


Basic Information

Item Value
RNA id TU96921
length 2848
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G72561
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14637870 ~ 14640768 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTTCCTTGTACGTTTAATGGCAAAATAACAGGACAAAATAAGATATTTACAACACTTAGTAACATGTAAACACAATCTTCTGTACAAAGAAATATACatgcaaaagtaaaaataagtcATAATAAGACATTCAAAATGACATTGCTGCAGTCTTGTTCTATGTGTATTTAAAATATGACATAGTTAAGAGGTTTACATCCTGGGTGTGGGCAAACTGCCCAGCCCTCTCTGTACATCTTTACATCATGTATAGGCTGGGTTTCCCAAAGGCATTTTATTACTTAGATCATATTCTTCCATGAATAGGCTTTAAGAGAATTTGATTTTGATAAACCGATTAACAGCATGATTTTGGGAAACCTAGATCCAcaccaataaataaaaatgacacaaaatgaAAGACTGTACAGACCGACAAAAGTCATTTAACTCAACATGTTATTGACTTGTTTAACATTAAATCAGATATTAACTCTTACAGCCTTCAGATAAAATAAGAAAGTTTGCACGTTTTAAGTTCCACCCACCTCTCTAGGTTGGCTCCCTCAACtggcacttaaaaaaaaagttttcaacaACTTTGTAACCGAAATACATCAACTTATTCAAATGAAAATAACTGGAAGAgacctctttcacggcagataCCTGTTAATGCTGAATGAATCCTAAAAGGTTTAATGCATTCTTCAATAAATTAAAGTCTGTGGTAAATGGTCCACGATGAGACATTTTTCCAGACCTTTTGCTTGGTAAAAATGTCAACCAAGTCTGTCTTATGACGTACAACTGAGATGCTAAAAAAATCGAGCGACATACACCAGTATCTACCTACAAAAGCCAAACAAACTTACACAGCAAACCACTTTGTGCACAGCTTGAAAAAAGACAAGTgaaatattgttgttttttttcagcaaaAATCCACCAAACAATTTCTTATAACaataagaataaataaatccagACTGGACCCGTGTAACACTCACATGTCCTGGTTCAGTGTGGTCTGTTATAACTTAACATGAGAAACAAAAATCTAAACATttgagcaggaaaaaaaaagcatagtcAACTTTGGTATtgttacagaaaataaaaacagaacaatgACAAAATGAAAGCATAAGTGCCTATATTTTATAgatacacatttttttatacattatttCTGAAAACCCACCTCTTGTCTGGGGGGGGTTTCGCAGATATTAATACTGAACTTAATACGTAAGAGTTAACACAATACAGACATCTATCGCAGTACCAGGTACGTACATGCCTTTTTAAGAATACGGCTACAACACAAAGTCTTCATAAATAGTTGCATAAATGTTAAAGCTGCAACATTGCACATGGGAATTAATGCAAAATACGAGTGCATTTCTAGTAGCGGTTTGTTCATGGTGAAAATCCAGCTGCTGAGGTTCCGCAGGAAGCGACTTACCTAACAAACTGCATGGAGTCACTAATACTCGGCAAATGAAATAGCTTTTGTTCATTTGAGACAAATTCTTCAAAATGATAATGAAAGGCAGGAATTCGTTATTTACAAATAAGGCGAATGCAGGTAAAAACCGGAGAAGCTTTGCCGAATAGCTTGTTGAAGTTAATTTAGTTTCCCTTAGTGTCACAAACTGAAAAGATTATACCTTTTAAATTGAACAGGGACATAAAGATAAGCAAACTATTGCACTGAATGTAACTATAATGTGTTTGTGGAAAACATGGTTTTGGTCTTTATCTTATTCTAGAATAAGTGGACCCTGCTGATGGGTGCCACTTTGTTCACACATCTCACTCctcctttgtttttattttacgtACTAACTCACCTTTGTTTTCCAAAAGGTACGAATAAAGACAGTTCTCTGTTTCCTCACTGtacatggtttcatttacaAAAAAGTAATCTctcattacaaaaaaacattttctcgtGTTCAACCGAAAGCAGCCTGAATTTCTCTTATTATACAGTATCATATTTTCTCTGTTCAGCACTGTTCGACTTGCTCAAGCTTGCTGAGAAAAGCTTGTTGAGAAAGCTCGGTTTTCTCTCCCTGCTAAGTCAAGGTTTGAAAGCTCAAACTGATTCCAGCAGTTCATTTGTTGTGCAGGCATAATGACAATATGCCAAGGTGTGTTCAGGAGGGGAGTTGGGGAGAGTCAAAGGGTTTATCAGCAGAGTCGCtcagtcagcagcagcaggacttTTGTGGCTTAGTGAAGGAAAAGGTGATCATTGTGGAAAAGTTGCTGGTGGTCCTCTCAGTAACACAGTGCAACTGAACAAAGTTAACTTGTTACCCATCCTCCATAGTGTGCTGGCCAGTCAGGAATTCCTTCTATACCACAACAATGCAGATAACAGGTCTCTACAGTACATGTTGCTGTCACATCTACCTAGTGAGCTGTTTGTTAGATGTGGTTGAGCAGGCGGCTGTGAAGGAAGGCCTTAATGGTGCCAATGGGCCGAACATCGTTCTGGTGTTTCCGTCTCTCGATGAAGGAAATGAGTCTGGAGGTATCCAGATGTGAGGTGTGATGATTCTGAGATGTTGGCAGCGGCGGTGGCTGCGTAAGATTTAAGGTGGCATGGCCAGCGTCAAAATTGATCACACCTCGAGGCAGGAGCCAGGGCTCCTGCAGGCAGGACGCTGCAGAGGGCCGTCGCTCCGGCTCGCCCTGGAGCAGCAGGCAGACAAAGTCCCTGGCAGCTGGGCTCACACCCTGGAAGTAATCCTCGGGGAAGCTGAAGTCCAGGCGACAGATGTTCAGACACGTCTCCTCCAAACTCTCGTCCAGGAAGGGAGAGGCGCCACTAAGTACAACGTAGGTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96920 lncRNA upstream 2847 14634177 ~ 14635023 (+) True G72560
TU96919 lncRNA upstream 4495 14633080 ~ 14633375 (+) True G72559
TU96909 lncRNA upstream 33232 14603984 ~ 14604638 (+) True G72551
TU96863 lncRNA upstream 119973 14514667 ~ 14517897 (+) True G72520
TU96813 lncRNA upstream 267779 14368266 ~ 14370091 (+) False LOC120562174
TU96925 lncRNA downstream 3608 14644376 ~ 14645788 (+) True LOC120562067
XR_005639683.1 lncRNA downstream 4073 14644841 ~ 14645241 (+) False LOC120562067
TU97010 lncRNA downstream 359903 15000671 ~ 15003134 (+) True G72634
TU97047 lncRNA downstream 460048 15100816 ~ 15163246 (+) True LOC120562980
XR_005639889.1 lncRNA downstream 460206 15100974 ~ 15163224 (+) False LOC120562980
XM_039804932.1 mRNA upstream 5149 14626478 ~ 14632721 (+) True LOC120561718
XM_039804933.1 mRNA upstream 5149 14626478 ~ 14632721 (+) False LOC120561718
XM_039804766.1 mRNA upstream 17989 14611912 ~ 14619881 (+) True LOC120561617
XM_039805511.1 mRNA downstream 62655 14703423 ~ 14704824 (+) True LOC120562066
XM_039806393.1 mRNA downstream 121602 14762370 ~ 14874113 (+) True dnah5
XM_039806394.1 mRNA downstream 121736 14762504 ~ 14872839 (+) False dnah5
XM_039806395.1 mRNA downstream 145776 14786544 ~ 14872839 (+) False dnah5
XM_039806960.1 mRNA downstream 767410 15408178 ~ 15414047 (+) True irx2a
TU96917 other upstream 7407 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 211690 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 461243 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 493574 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 1167420 13468227 ~ 13470450 (+) False prelid3a
unassigned_transcript_349 other downstream 385814 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 912696 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1377591 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 2727935 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 2808817 17449585 ~ 17452568 (+) True G73031

Expression Profile