RNA id: TU96925


Basic Information

Item Value
RNA id TU96925
length 852
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id LOC120562067
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 14644376 ~ 14645788 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGGGACTCGGGAGATGAGTCCGAGAGTTAGAGCAAAAACTTCTGAAATGTGGGAATATTTCAGGCCAAAtggtaaaagagttgtctgtacactctgtcagacttcacttggaaacacacaggagttgttcaagACGTTTGGAGagggtttttttctctcctccatatcacctccggggctccaaagatgcgctcacagaaaagaaaaagtcaacAAAGCAGTCGCCGTCTTCACAACTCCGAGACAAACTGTAGCAAGCGCTACTAACCGGAGCAAGGactaacctcgcctcataacgAGGCTGTGACCTATATTTGCTAGGAGCTAtgtctgcaagtccagatttacatgatgctgataatgacgccattgtgtctgcctgtaagacatattacgagacagcacgcaggagcttcagctagaaacaaccagatgtggcatcgcgggcagaagctgtgaagagttcagctcggagtcggtcgagaagaaaagaggctgctggaagcgagacagagtgagctggctgcgggtgaggtgggcatttggaagtgcgccacCATAGACCTACAGGACAAGgcaccacagacgtctgctaaatggaccgaattcagaccgaatgctgccggttacctccagctcCGAGGCGGCCGAGGGTTAGGTGTGGACGGTGCTGCTTCTCGTGAGCgtgggatatttgttgtgtgtgctgtgtgtctccgatgctttgtacatagttttttttctgattgcgtttgtgttttgtgtcaataaagctctatctttgaataaacagcacgttcctggcaaatcattttaactatgataatcatgacatgaatatacaacatag

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96921 lncRNA upstream 3608 14637870 ~ 14640768 (+) True G72561
TU96920 lncRNA upstream 9353 14634177 ~ 14635023 (+) True G72560
TU96919 lncRNA upstream 11001 14633080 ~ 14633375 (+) True G72559
TU96909 lncRNA upstream 39738 14603984 ~ 14604638 (+) True G72551
TU96863 lncRNA upstream 126479 14514667 ~ 14517897 (+) True G72520
TU97010 lncRNA downstream 354883 15000671 ~ 15003134 (+) True G72634
TU97047 lncRNA downstream 455028 15100816 ~ 15163246 (+) True LOC120562980
XR_005639889.1 lncRNA downstream 455186 15100974 ~ 15163224 (+) False LOC120562980
TU97071 lncRNA downstream 944109 15589897 ~ 15590158 (+) True G72680
TU97101 lncRNA downstream 1191174 15836962 ~ 15844938 (+) True G72704
XM_039804932.1 mRNA upstream 11655 14626478 ~ 14632721 (+) True LOC120561718
XM_039804933.1 mRNA upstream 11655 14626478 ~ 14632721 (+) False LOC120561718
XM_039804766.1 mRNA upstream 24495 14611912 ~ 14619881 (+) True LOC120561617
XM_039805511.1 mRNA downstream 57635 14703423 ~ 14704824 (+) True LOC120562066
XM_039806393.1 mRNA downstream 116582 14762370 ~ 14874113 (+) True dnah5
XM_039806394.1 mRNA downstream 116716 14762504 ~ 14872839 (+) False dnah5
XM_039806395.1 mRNA downstream 140756 14786544 ~ 14872839 (+) False dnah5
XM_039806960.1 mRNA downstream 762390 15408178 ~ 15414047 (+) True irx2a
TU96917 other upstream 13913 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 218196 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 467749 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 500080 14133611 ~ 14144296 (+) False cmc1
TU96598 other upstream 1173926 13468227 ~ 13470450 (+) False prelid3a
unassigned_transcript_349 other downstream 380794 15026582 ~ 15026653 (+) True trnae-cuc_16
TU97064 other downstream 907676 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 1372571 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 2722915 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 2803797 17449585 ~ 17452568 (+) True G73031

Expression Profile