RNA id: XR_005639889.1


Basic Information

Item Value
RNA id XR_005639889.1
length 889
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC120562980
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15100816 ~ 15163246 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atTTTTCCAGGAAGTAAAAATCCCACATGGCAAACAATTATGTGAAAATGTAGATCACTGCCTCCATTCTTAAACATGCTGAACAAACAAAGATGCACATTAGGAGGCAGAGCAAATGTAAGGTTGAGTTTGATTCTGAATTAGGTAGCCAGCCAATTCCTTCCTGCATTAAATGCCAAAGAAAATGGAAAAGTTTGCAAATGCAAGACCCACACACTCAATCTGCTGCAAAGAAAGGAAGGCAGCTATGCTGTGTTTTCAACTAGCAGCAGTATGTGGATAAAAACTGAACTTTTAAGCTGACATACTTTTCAAACTGATAAAAATGCACAGTTCTTACTGGTCGTCAAGTCTCTGGTAAAGCTGGAGGCCAAGAGGGAGGACTTTTATAAGAGAACAGATGTCTTCATGAAGATGGCTACATGGACTTTTTCCAAGTGACAACAAACTGCAGATCTACAAAAATATTATCACAATTACCCTGTGAGCCAGGACGggagggaactccccgccgctCGTGACTGTCTGTGTGCCACCCTCGGGCTTGTGGTCTGGTCGGATTTGTGAAACACTGACAGACAACCCCTTCATCAAGCCTGTCAAACAAGGATGACAAATGCGTCTCCACATCCCCAAGATGCCTACAATATTTAAAGCCATGGGAGAATGGCGAAGCTGACAGAGAATAGCAGACGCAAAGTTCAAGCCGCGTCAGGCTGTATCATTCTCAAATTCTGAGGAGAGACTCTGAGTTGAACCTGATGGCATGTTGACTTAATGATTCTGACAGAGCATATATGGTGTCTGTCTCAGGTTTCTACAAGGCAGTGAAGTCAAGTCAAAATATATTTCATCGACTTAAAGAGGGATTTGCTTACAATGCTGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97010 lncRNA upstream 97840 15000671 ~ 15003134 (+) True G72634
TU96925 lncRNA upstream 455186 14644376 ~ 14645788 (+) True LOC120562067
XR_005639683.1 lncRNA upstream 455733 14644841 ~ 14645241 (+) False LOC120562067
TU96921 lncRNA upstream 460206 14637870 ~ 14640768 (+) True G72561
TU96920 lncRNA upstream 465951 14634177 ~ 14635023 (+) True G72560
TU97071 lncRNA downstream 426673 15589897 ~ 15590158 (+) True G72680
TU97101 lncRNA downstream 673738 15836962 ~ 15844938 (+) True G72704
TU97106 lncRNA downstream 681086 15844310 ~ 15847320 (+) True G72705
TU97104 lncRNA downstream 681937 15845161 ~ 15847320 (+) False G72705
XR_005639697.1 lncRNA downstream 805953 15969177 ~ 16008811 (+) False LOC120562129
XM_039806393.1 mRNA upstream 226861 14762370 ~ 14874113 (+) True dnah5
XM_039806394.1 mRNA upstream 228135 14762504 ~ 14872839 (+) False dnah5
XM_039806395.1 mRNA upstream 228135 14786544 ~ 14872839 (+) False dnah5
XM_039805511.1 mRNA upstream 396150 14703423 ~ 14704824 (+) True LOC120562066
XM_039804932.1 mRNA upstream 468253 14626478 ~ 14632721 (+) True LOC120561718
XM_039806960.1 mRNA downstream 244954 15408178 ~ 15414047 (+) True irx2a
XM_039804827.1 mRNA downstream 390317 15553541 ~ 15560292 (+) True irx4a
XM_039806257.1 mRNA downstream 456292 15619516 ~ 15653052 (+) True LOC120562533
XM_039807297.1 mRNA downstream 494017 15657241 ~ 15675222 (+) True slc6a3
XM_039807219.1 mRNA downstream 519195 15682419 ~ 15707502 (+) True LOC120563110
unassigned_transcript_349 other upstream 74321 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 470511 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 674794 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 924347 14175849 ~ 14176627 (+) False LOC120562174
TU96779 other upstream 956678 14133611 ~ 14144296 (+) False cmc1
TU97064 other downstream 390240 15553464 ~ 15555952 (+) False irx4a
TU97163 other downstream 855135 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 2205479 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 2286361 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 2293419 17456643 ~ 17460327 (+) False ubxn11

Expression Profile