RNA id: TU97106


Basic Information

Item Value
RNA id TU97106
length 458
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G72705
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 15844310 ~ 15847320 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGGATTATCGTTGCCATTGTCATTGATAGAATTTCCAATGCGGATCTCGGCACCAATGATTCTTTCGTGGCAACAATCTCCTCTGTTGGTGATGGTGACAGTGTTGATTTTATACGTCTTCAGGAGGTCCAGTCTCCACCATGGTTTTAAATCGTTTTGTGTGTGGCTACAGGAGTCCTTTCCATAATTGCTAGCACGATTTCCATCAATGGCCCTTTCAGGCACGCCATTCCACCCAAGGGAGGACTGAATCACCTTTCCACCTTTAGCAATattaggaactgcaaaaattcACAACATGtgtaattaaaatatatatggaAGGCACAGACGAATTACATGTGTTGATCTGACCATATTTGCCACCAAAGAACAGGCAGTGACACGGTTTTGTCACAGAAAATGTGTTACTTAAGGTGGTAGGGTGGGAATTGCCGTCAGACTGGGGGAAGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97071 lncRNA upstream 254152 15589897 ~ 15590158 (+) True G72680
TU97047 lncRNA upstream 681064 15100816 ~ 15163246 (+) True LOC120562980
XR_005639889.1 lncRNA upstream 681086 15100974 ~ 15163224 (+) False LOC120562980
TU97010 lncRNA upstream 841176 15000671 ~ 15003134 (+) True G72634
XR_005639683.1 lncRNA upstream 1199069 14644841 ~ 14645241 (+) False LOC120562067
XR_005639697.1 lncRNA downstream 121857 15969177 ~ 16008811 (+) False LOC120562129
TU97154 lncRNA downstream 121871 15969191 ~ 16009134 (+) True LOC120562129
TU97156 lncRNA downstream 121871 15969191 ~ 16005395 (+) False LOC120562129
TU97202 lncRNA downstream 327774 16175094 ~ 16181930 (+) False G72775
TU97200 lncRNA downstream 331192 16178512 ~ 16181930 (+) True G72775
XM_039807219.1 mRNA upstream 136808 15682419 ~ 15707502 (+) True LOC120563110
XM_039807297.1 mRNA upstream 169088 15657241 ~ 15675222 (+) True slc6a3
XM_039806257.1 mRNA upstream 191258 15619516 ~ 15653052 (+) True LOC120562533
XM_039804827.1 mRNA upstream 284018 15553541 ~ 15560292 (+) True irx4a
XM_039806960.1 mRNA upstream 430263 15408178 ~ 15414047 (+) True irx2a
XM_039805971.1 mRNA downstream 648406 16495726 ~ 16508741 (+) True mboat1
XM_039806537.1 mRNA downstream 785556 16632876 ~ 16718524 (+) False LOC120562688
XM_039806538.1 mRNA downstream 785559 16632879 ~ 16718524 (+) True LOC120562688
XM_039806536.1 mRNA downstream 851059 16698379 ~ 16718524 (+) False LOC120562688
XM_039806539.1 mRNA downstream 874316 16721636 ~ 16724556 (+) True LOC120562690
TU97064 other upstream 288358 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 817657 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 1213847 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 1418130 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 1667683 14175849 ~ 14176627 (+) False LOC120562174
TU97163 other downstream 171039 16018359 ~ 16072201 (+) True G72750
unassigned_transcript_351 other downstream 1521383 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 1602265 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 1609323 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 1798193 17645513 ~ 17647186 (+) True G73123

Expression Profile