RNA id: TU97163


Basic Information

Item Value
RNA id TU97163
length 4516
RNA type TUCP
GC content 0.44
exon number 2
gene id G72750
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16018359 ~ 16072201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTTTTCAGTTCCAGCTGATATTTATTTCCTTCCTTGAAAAAGTTCTGTACACAAGTTTATATCAACAATCTGACAGGCAGTGAATGGACACAATTTAGCTGGCATGAGTTTCCCCTCCCTTTCTCAGAGTCTCAAAAAAAGGGTGGTTCCTTTGTTTATGGCATGATTAGAGACAATAAATGATAATTCTACACAGCATATTGCACAGGATGGatgaaaaataaagtaaatatatttaaaaatgctttcatatatatatataaaaaaaaagagtcctGAACTGACCACCTTAAATGTAAGTAAGGATGTGTAAAAGATAGCAGTTCTAGACAGTGCCTGTCCTCGATAGCAACAacgtacataaacacacaatctTTTTGCTTTATGATACAGTCAAATATACAAAGATCGAGTTCACGTTTCATcgtttttcctcattttttcatttttttctgaaaaacacaacagctaatAACCTGAATCTGAAATACAAATGCTATTCACCATGCCATAAAGATACTAAAACAATTATTAGCTAATAGTTAGCTGACAAGTAGAAAAGATTATATATTCAAATACAATGAGAAACGCAGAACAAGTAGGTGTTGCGGAACTCAAGTCAGAAATTTGAATATGCTTGGTGTTATCATCCTTGTTGTTTGCTTGCTGTATTGATAGCCTGTTCAATCCAGAGGTTGACTGGCAAATGTGACATCAATTAATGAAAACATCAAGAAATAAGTCAAATTTAAAGCTACAATCTCCTCATTTGTTGTCATAGGCAAGATATCTGACGGGAAATGCAAAAACAAGTGGCTGCTTAAGATAGTGATGCTGTTAAACCCACATGGTCCACAGGAATAGCCTCTAGAAATAATGCATTCCTGTGTCTTTAAGGAGCCTGCAGACTGGCACTGTAAACGTAGAAGGTAGGCAGATACAAAGGCTGGTGCTGCTTTCAAGTGCTGTCGGAAAAATCGTAATTGCATCCTTATAACTTCGTGGTTAAGTATCTCATGTCTGTACTGACAATATGGGTTGTTCAGGGATTGGACATCAAAGAAGTCCTGTCAGTATGTGCTGGTAAAAGTCAAAGAAAGTTTTCCAAATTTGTGAATAAAACACTAGGCTAATTACACACTGAATTCTTATTCCCTTTGCCCGGGTCACTTAAGTAAAAAATACCTTGGTGCCTTTAATTTCTAAAATCAAACAACAGGCACCATAGTGAGTGAAGGTCTATTTTGCTGGCTGTTCTTACAAAAGCATTTGAACAAGCGATACAAGACATAAGTACGAGTTTACCATgagcacttgaaggcagcatgAAAACCAGCCTGCCGGGGTATTAAAAATTAGGAAATCCAATACAGCTGTATTCGTAGGCTACACACACCGATTGTTGACTCCCCCATTTTCTATATAGATTTGTACAAAAATAcactgagaaaataatcaaactGTTTCCTCTCTTTTAAGTGTCCAAAAAGTGtgtacatttaaatataaaatgaaatcaaaagttgtgtgtttttaaaactCTAGCCCTTCGCCTGAGAAGGAAATGTGACAGACACATACTGACAAACAACCATgtaagaaaggaagaaaaaaacaggactAGATCAtgtacaaagaaataaaaaatgatcaAGTCAAAATGCTTGGCCCAGTATATAAATACAACATCCCATATAAAATGGCATCTGAATAAATGTACAAAACAAAGCTCAGAAGATGAAAAAAATCGGTGAGGATTTCTCTATAGCTATCATCTGAAATTAAAGAATTTTGGTCCTGAATCGTAGAGAACACGTGTATAAAGTTCAGCACAGATTTGAAGTTGCGTTTGAATCCTGAAGTTTGAAAAATTACAACAGCTGGTGATTATTTCaatgtcctttttttaaaaaaaaaagagaagaaccGAAAGCGAGCGCCACCAATCTATTTAAATAACCCTAATACTAGTTTTGAAATTGCTCGACAGCCTCACAGAAAATCTCAGCACAAGATAGTGACAAAGTAGGCTATCATGCTTTACATGTTTTCTGCTTTTGAGAAAATATTCGACTTATAAAAAACATCAACCCACCTCGGTTTCATTAAAAAATCCCTCTCGGTGACacaccacaataaaaaaaaataaaaagaagtcGCACGACAGTCCTATTTCTGTACCTGTTTAGTGGTGAAGTTCACTTGGCGATTGGTAAAAAGTTGTGaaatgtcccttttttttttttaaaatcagcaacaataTTGATTAAGTGAACGGCGGACCGCATAACGTGCAAATCAATCACAGTTAAGTTGTTCAGTTCAAAAACAGTGAGCGTTTCACTCACAGGAAACGCAGTCagtctttcctttttctctccttctcgtGTTTGCACTCCACTTTTGTGGTGGAACCAAGTCCCCCTGTCCACGCATCCAAAGAAAAAGTAGGAAAAGCACGTTATTCGCTTTAAAGTTTAGCTCTCCAACGATTTGCAGCTCTTGCCTTTATGGACGAGACGGGGGCTAGTTTCAGTGGGGTTTTACTTGCCTGGTGTTTCTTGCCTAGAACACTTGAACTATTACGCCCACTGTACCAGGAACTCCGGTTTCTGCTTGTGGTCATATTTTAGCTCGCAGGACATTTACCTGTcgttttgttttgcattttgctcACTCAGTACGTGAACACCAGGTTGGAGATGGTGGACTCCAGCCAGTCCCCGGAGATCATTTCGCTGACTTCGGGTGTGCAGTAGTCGGGAAACTCAAAGTGGGAGCCCCCGGAGCCGGACTCAAAGTTCAAATCCAAGTCCCTGTCCAGCACCGAGGAGCCAAAGCTCCCCAGCGACATGCTATCAAAGCTGGGGCTCGGGTTAATGTCGAGCAAGTCGTCCTCAAACTCTTCATCCTCcgaggaagaggatgaggacGAGTGCGACGAGGCGGAGGAGTGAGAGCCGGAGGGAGTCGGTGAGGAAGCCCGCCGACTGCTGTATGTGTGACCGCCCagattgctgctgctgctgctgctgctgctgctggcgggGGAGTCAGCTCCCTCCTCCCTGCCGCTGGCCGCGTCCTCATACAGGCTGAGCGGGTCGCTGGAGTCCGCCGAGCTACTGAGCGTCGGGCTGGCCGGGACCACGACGGAGGACGCGGGGCTGACGCTCAAGTTGGCCCCGCTGCTCCCGAAGACGTACACCCGCTTGGGCTTCTTGCCATCCGGTATCTGCTTGGCTGCTGAGGAGACAGATTTCGACTTGTAGAGAGAGTTGTGATGGTGCTCTGATGTGTGCTCAGAGGCAAACGGTGATGCTTTggtgctactgctgctgctgctgccgaaAAGTGATTTGTggggtctgctgctgctgctgctgctgggtgaTTTGGATCCATTCTTCCTCGAAGATGAGGATGTCTTAGTGCTGGTGTTGTTAGAGCTACTGTTGAGTTTCTCTCCCTTGTCTCCGTTACTGCCAGGCTTGGAGGCGCTTGATTTGACCTTCTTCCTCGGCCGGTACTTGTAGTCGGGATAGTCCGCCATGTGCTTGAGCCTGAGCCGCTCCGCCTCTCTGATGAAGGGGATCTTGTCGCTGTCTCTGAGAAGCTTCCACCGCTTCCCCAGCCTCTTGGAGATCTCAGCGTTGTGCATGTCCGGAGACTGCTCCATGATCTTCCTCCTCTCTATCTGTGACCACACCATAAACGCATTCATGGGTCTCTTGATGTGACCGCTGGGAGTTTTACACCATGCCGGGTTCTCTCCAAGCTTGTCCCCGGCGGTCGAAGACGCCGTGGAGCCCGGGGAGAGAGGCGAGGCGGCCGGGTCCAGATCCATGCACGCTCCGGAGTCGGAGCTCGAATCTCCGGCAAAAAAGGACAGCGCCTCGGCGGTGCTCTCGGTGTGGCTCATTTTCTGCACCATGTTGCCCAGTTATACACAGAGCGGTGTacttgctctttctctctccctctctccttggTCCTCCGATTCACTTTAAAGCAAACTCAGCTCTTTTCTCCCCCTCTTTACAGTttgagcggagtaaaaaaaaagcgcAAGAAATAATTCACTCCTGAGATGTGCAGGAAACTCGATAACAGTTCAGTCCAGAGTAGCCTTAAAAGgctaatgtgtaaaaaaaaaagtttaatttccAGGTTTTGTGTTAAAACAACACGGACAGTATAGCCCACTCTCCACTGAGTACTCTgttatctgtctctctcagccTCTTCCTTCTGTTATAAAATCAATTCAGCCGTGTGGTGGCTGAACAAGTCTATGCAGCTGCAGAGCGCAGACTGAGTGCTACACTGTGCACTCGGGCACTTACAGTATGCTCCCAAGTACAGAGTGTAAGGTAAGTGCTTTTCTCTGCATCAGCTCTGTCCCCTCTCCTAGAAACAAAAGCCATGCATGctggggaggaaaaaaaggaaccTAGAGTTACACTGTCCGCCTTCCATCTGCAGACCTGCAGTCGAGTTTCAAGCAGCCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97154 lncRNA upstream 9225 15969191 ~ 16009134 (+) True LOC120562129
XR_005639697.1 lncRNA upstream 9548 15969177 ~ 16008811 (+) False LOC120562129
TU97156 lncRNA upstream 12964 15969191 ~ 16005395 (+) False LOC120562129
TU97106 lncRNA upstream 171039 15844310 ~ 15847320 (+) True G72705
TU97104 lncRNA upstream 171039 15845161 ~ 15847320 (+) False G72705
TU97202 lncRNA downstream 102893 16175094 ~ 16181930 (+) False G72775
TU97200 lncRNA downstream 106311 16178512 ~ 16181930 (+) True G72775
TU97226 lncRNA downstream 408478 16480679 ~ 16481932 (+) True G72795
TU97227 lncRNA downstream 410054 16482255 ~ 16482498 (+) True G72796
TU97228 lncRNA downstream 413512 16485713 ~ 16485919 (+) True G72797
XM_039807219.1 mRNA upstream 310857 15682419 ~ 15707502 (+) True LOC120563110
XM_039807297.1 mRNA upstream 343137 15657241 ~ 15675222 (+) True slc6a3
XM_039806257.1 mRNA upstream 365307 15619516 ~ 15653052 (+) True LOC120562533
XM_039804827.1 mRNA upstream 458067 15553541 ~ 15560292 (+) True irx4a
XM_039806960.1 mRNA upstream 604312 15408178 ~ 15414047 (+) True irx2a
XM_039805971.1 mRNA downstream 423525 16495726 ~ 16508741 (+) True mboat1
XM_039806537.1 mRNA downstream 560675 16632876 ~ 16718524 (+) False LOC120562688
XM_039806538.1 mRNA downstream 560678 16632879 ~ 16718524 (+) True LOC120562688
XM_039806536.1 mRNA downstream 626178 16698379 ~ 16718524 (+) False LOC120562688
XM_039806539.1 mRNA downstream 649435 16721636 ~ 16724556 (+) True LOC120562690
TU97064 other upstream 462407 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 991706 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 1387896 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 1592179 14425794 ~ 14426180 (+) True G72506
TU96805 other upstream 1841732 14175849 ~ 14176627 (+) False LOC120562174
unassigned_transcript_351 other downstream 1296502 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 1377384 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 1384442 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 1573312 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 1678755 17750956 ~ 17779130 (+) False paqr7b

Expression Profile