RNA id: TU97200


Basic Information

Item Value
RNA id TU97200
length 2008
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G72775
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16175094 ~ 16181930 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGAATAATGATCTCCTTTCTATGCTTCCCGCCTCAATATTTCATAGTAAGTGATGATCTCCCAAACATAAAGGGTGTTGTTGCATCCATATTTCATTGGAGAACAATGCAGTGTGACTGACATACACAGTGAGGAATTGTGCTTACAAAGCATCAAAAGAACTGTCACACAGTATGGATGGCTGCAGAATAATATAGGGCACTGCTGGATGGATGTAACAAGCTTCATAGCTACACGCATCATTTGATCACATAATAcaaagcttgtgtgtgtgtgtgtgtgtgtgtgtgtgagaCACGCTCCATTTGATCGGGTAATATAAAGCTTTggtgcctgtgtttgtgtgcaagtCTGCTTGACGTGCATCATTTGCCCATATACTACAAAATTGCAGTGTGCTGTGAGTGTGTTTGCCATGCACCAGCTAGGTAAGAAAAAGCCAGGATACACATCTGTGTGGCAACAGAATGTGGAACATGCATCATATACTTAGATAATACAaagctagtgtgtgtgtaggttacAAACAGTGGTATGTATAACAACAGGGCTTTCTGAATAAGAGAGCGATGAGCCCTGTCACTCCTGAACCACACATGCTTTCTGCTAAATTAAGCATACAGCATCAGCTACATCAGACAGCGCAGGCATGtatgcgcacgcacgcacgcacgcacgcacgcacacacacacacacgctgaaagAAACACTTGTGACTAGGAATATATGCAGggtatgtgtacacacacagataaaaatGCAGACATACTGACAGAGACACGTGCCAGTGCAATGCGACACATAAATTGGGGCATGGATTATTAACTGTCGTAAAATTCAGAACACATGTTGGGACCGTTGTACCTCCaaacagaaaggaaagacattagagacaaacacaaacacactatacAGTATACATGACAACAACTGAGCGATACAGAGCActgtgaagacacacacacttatttattGGTAAAAACCTAGCAGTTAATACACAAGTAACTTCACACATGAGATATTGCATTTTTCCTTTATTAAACTGTTTTGGATAGTTGCAACAGTGCTAATCAAGAAAAGCCAAAAGGTCTGTCTCATTAATAACTTGCACACTACAAGTAGCCCACGTATGAACAGAGTACTTGTATTACAGGGTCAGTTTACCTGACTGACAAAAAAAGGAAGACAAAAAATCTCATTTGCCTCTAGTGATGTATAGTTTTAGATACATTTGCCTATGTCCCAGTCACCTTCACTGTATTGGGGTGGCAGCAAAAATCTTACCAGACACCACTACAGGtaagtgagaaaaaaacaacccttTATGGTGGCACCAAAGCAGGCCatcacatgcaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaattaaaatactAACTTCACTAAAAACAACATGAATCTCAGAACATTTAAATAATCCTTAAATCAACAccatgtaacttttagctgcagctgtagttccaatgagacaacctgtagggggaccgaagcaggAAAGGTtccatagtgttgctttaactgtGTAGGTGTTACTGACTTTGTCTTGTTTTCTTTGGGTTCACTCAAAGTTGAATAAGAGCATGTGGAGTTACAGGGGATCGTTTTAGCGCTGTATTCACCCGCTTCAAACACATTGTTTAGGCTCCTATGATTTCActgtcctctctcttcttcacaATCATCTTCTTCTGTTCTTCTTCTGGTTGTGCCATCAGTACAGTTTCTCTACGATGAAGGCCAAGATGGCTGCTGCCAGAGTGAGCCCGATCCCCAGCTTCTTCAGTACTTCCCTGTCAAGACTGTAAGAGCCGATCAACAAAACAGATGAAGAAGGCACAGAAGAAGCAGGACCTTGGATGCCATTGGGCATCTGATTCTGTGGAAGGAAACATACAGAAAGTAACTAAATAGTTGAAATAGTAAAGTTAGAATTTGAATATCTCTCGTGATATTATGTGAATATTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97154 lncRNA upstream 169378 15969191 ~ 16009134 (+) True LOC120562129
XR_005639697.1 lncRNA upstream 169701 15969177 ~ 16008811 (+) False LOC120562129
TU97156 lncRNA upstream 173117 15969191 ~ 16005395 (+) False LOC120562129
TU97106 lncRNA upstream 331192 15844310 ~ 15847320 (+) True G72705
TU97104 lncRNA upstream 331192 15845161 ~ 15847320 (+) False G72705
TU97226 lncRNA downstream 298749 16480679 ~ 16481932 (+) True G72795
TU97227 lncRNA downstream 300325 16482255 ~ 16482498 (+) True G72796
TU97228 lncRNA downstream 303783 16485713 ~ 16485919 (+) True G72797
TU97229 lncRNA downstream 307663 16489593 ~ 16490381 (+) True G72798
TU97233 lncRNA downstream 312307 16494237 ~ 16494575 (+) True G72801
XM_039807219.1 mRNA upstream 471010 15682419 ~ 15707502 (+) True LOC120563110
XM_039807297.1 mRNA upstream 503290 15657241 ~ 15675222 (+) True slc6a3
XM_039806257.1 mRNA upstream 525460 15619516 ~ 15653052 (+) True LOC120562533
XM_039804827.1 mRNA upstream 618220 15553541 ~ 15560292 (+) True irx4a
XM_039806960.1 mRNA upstream 764465 15408178 ~ 15414047 (+) True irx2a
XM_039805971.1 mRNA downstream 313796 16495726 ~ 16508741 (+) True mboat1
XM_039806537.1 mRNA downstream 450946 16632876 ~ 16718524 (+) False LOC120562688
XM_039806538.1 mRNA downstream 450949 16632879 ~ 16718524 (+) True LOC120562688
XM_039806536.1 mRNA downstream 516449 16698379 ~ 16718524 (+) False LOC120562688
XM_039806539.1 mRNA downstream 539706 16721636 ~ 16724556 (+) True LOC120562690
TU97163 other upstream 106311 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 622560 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1151859 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 1548049 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 1752332 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 1186773 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 1267655 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 1274713 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 1463583 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 1569026 17750956 ~ 17779130 (+) False paqr7b

Expression Profile