RNA id: TU97227


Basic Information

Item Value
RNA id TU97227
length 244
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G72796
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16482255 ~ 16482498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tacataacaaagtagagggaggcaggccagccaagccagatccggcagggggagagttctaagcccgaaaaagctacctctccttatgacctgtctctcttagttacctgttatagttacgctgttatagtcctagactgccgggggacttccttcctttgacacactgagctgctctctcctctccctttctattactgttactattactattactatttgtgtgcagcccatcccagaaatg

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97226 lncRNA upstream 323 16480679 ~ 16481932 (+) True G72795
TU97202 lncRNA upstream 300325 16175094 ~ 16181930 (+) False G72775
TU97200 lncRNA upstream 300325 16178512 ~ 16181930 (+) True G72775
TU97154 lncRNA upstream 473121 15969191 ~ 16009134 (+) True LOC120562129
XR_005639697.1 lncRNA upstream 473444 15969177 ~ 16008811 (+) False LOC120562129
TU97228 lncRNA downstream 3215 16485713 ~ 16485919 (+) True G72797
TU97229 lncRNA downstream 7095 16489593 ~ 16490381 (+) True G72798
TU97233 lncRNA downstream 11739 16494237 ~ 16494575 (+) True G72801
TU97304 lncRNA downstream 248339 16730837 ~ 16731044 (+) True G72852
TU97321 lncRNA downstream 477290 16959788 ~ 16962840 (+) True G72859
XM_039807219.1 mRNA upstream 774753 15682419 ~ 15707502 (+) True LOC120563110
XM_039807297.1 mRNA upstream 807033 15657241 ~ 15675222 (+) True slc6a3
XM_039806257.1 mRNA upstream 829203 15619516 ~ 15653052 (+) True LOC120562533
XM_039804827.1 mRNA upstream 921963 15553541 ~ 15560292 (+) True irx4a
XM_039806960.1 mRNA upstream 1068208 15408178 ~ 15414047 (+) True irx2a
XM_039805971.1 mRNA downstream 13228 16495726 ~ 16508741 (+) True mboat1
XM_039806537.1 mRNA downstream 150378 16632876 ~ 16718524 (+) False LOC120562688
XM_039806538.1 mRNA downstream 150381 16632879 ~ 16718524 (+) True LOC120562688
XM_039806536.1 mRNA downstream 215881 16698379 ~ 16718524 (+) False LOC120562688
XM_039806539.1 mRNA downstream 239138 16721636 ~ 16724556 (+) True LOC120562690
TU97163 other upstream 410054 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 926303 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1455602 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 1851792 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2056075 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 886205 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 967087 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 974145 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 1163015 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 1268458 17750956 ~ 17779130 (+) False paqr7b

Expression Profile