RNA id: TU97344


Basic Information

Item Value
RNA id TU97344
length 274
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G72879
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 16991716 ~ 16991989 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGTAGTGGAAATATATGTGTGATACATAACATCAACCTACAGTACACAGTGGGGTTGATCAAGGTTGATTTGcattttcctttctctcccaTTGTGTTTAATTAGATCAATCTTACACTAAACATTAATATGTTTTTCCCAATAGCTGCCAAGCTGTGTGACTGCCAAAAGTGTAAATGTGGAGTATACTGCTGGCCCAGCAGACACCACGTAACTATGACCTCATGAGTTTTAATCCACCTAAGTGTCTTCCTCCTTGTGCCATAATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97321 lncRNA upstream 28876 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 260672 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 497141 16494237 ~ 16494575 (+) True G72801
TU97229 lncRNA upstream 501335 16489593 ~ 16490381 (+) True G72798
TU97228 lncRNA upstream 505797 16485713 ~ 16485919 (+) True G72797
TU97325 lncRNA downstream 73600 17065589 ~ 17065911 (+) True G72862
TU97549 lncRNA downstream 400279 17392268 ~ 17403627 (+) True G73019
TU97564 lncRNA downstream 435839 17427828 ~ 17463027 (+) True G73027
XR_005639682.1 lncRNA downstream 508600 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 931961 17923950 ~ 17926628 (+) True G73186
XM_039804925.1 mRNA upstream 1119 16984611 ~ 16990597 (+) True LOC120561714
XM_039805708.1 mRNA upstream 93751 16858023 ~ 16897965 (+) True sntb1
XM_039805707.1 mRNA upstream 141484 16845953 ~ 16850232 (+) True LOC120562165
XM_039807231.1 mRNA upstream 160553 16816442 ~ 16831163 (+) True LOC120563118
XM_039805980.1 mRNA upstream 178963 16732633 ~ 16812753 (+) False LOC120562315
XM_039804920.1 mRNA downstream 3320 16995309 ~ 17065077 (+) True LOC120561713
XM_039804921.1 mRNA downstream 3320 16995309 ~ 17065077 (+) False LOC120561713
XM_039804923.1 mRNA downstream 3320 16995309 ~ 17065077 (+) False LOC120561713
XM_039804922.1 mRNA downstream 3320 16995309 ~ 17065077 (+) False LOC120561713
XM_039804924.1 mRNA downstream 3320 16995309 ~ 17065077 (+) False LOC120561713
TU97163 other upstream 919515 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1435764 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 1965063 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2361253 14626478 ~ 14630463 (+) False LOC120561718
TU96848 other upstream 2565536 14425794 ~ 14426180 (+) True G72506
unassigned_transcript_351 other downstream 376714 17368703 ~ 17368775 (+) True trnar-acg_16
TU97574 other downstream 457596 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 464654 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 653524 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 758967 17750956 ~ 17779130 (+) False paqr7b

Expression Profile