RNA id: TU97549


Basic Information

Item Value
RNA id TU97549
length 1038
lncRNA type inter_gene
GC content 0.57
exon number 2
gene id G73019
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17392268 ~ 17403627 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTAATCAGCCTTTGGTTGGGCATCCATCTCTCTTTCCAGCCGATTGGTGAGGGCTTCTAACTTTATTTCAGCTGCTGAAGGCCCCTGTTCAGGGGGCTGCGAATGAAGAGACTCGCAGGGTAGATAGACAGGCTTGGGAGAGCACAGGACATCAGCTTCAGCACTGACTGCATGTCCACAGATGGGTATTTGGCTCTGACCTTGACCCTGGCTGCTGCTTCTCGAGACATTGCCAGGGATCAAGGCAGCTGATGCCACCTGGGCTTTGGGTAGAGTTGTTTCAAAAGGTGCAGGTAGGAGCGAGGACGCTGCCGCAGGACCATTATGGCTGGTAGAGTGTCTCGAATTAGGAGAAGATGGTGCATAATGGGTTGCAGAGTGTGTGGAGGGCTGCTGCATGTGGAACTCAGCTCCTGCTGTGAAGGCACTCAGAGGCAGGGCATGGATGAGGTCAGGTTTGGCTGAGCCAGAGGGCTCTCCAGCCCAGGCCTTGGCTGGCCCAGCAGATGAGGGTGGACTCTGGTTTACAGACGGGGTGACAGCCTGATTCTGCTGGGGTGGAAGACTGTTGGCGGTGGGACGTGCAGACTGGCTCTGGGGCTGCTGCTGAGATGTGCTGTTGCCCCCAGGCCCAGACAAAGCTGGGGAAAGCTGGCTCTCTCTGGATGGGGCCCAGGCAGCCGACTGGCTCACCGGGTGACGAGCATGTGTGGGCGCGCTATGAGACGCGTTTCCTGGGTTGGGGGGAGTATGTGGCTCTGAGCGCTCCTTATTATCGTAATTGTTTCCGTAGCCATATGCCCTGCCGACTGGAAGTTCAGACTGATTAACTGTGTGGTGTTTCTGGCCGTCAAACTGTGCGTACTGATTCCCAGCCGTGGTGCCCGGCACAGGGCCAGAGAGTATCGGGGGCTTCGCTGCCGCTTCACACGGCTGCCTGTACTGGCCGCTGTCTGCCTGTTTGAAAGTCTGGCCCTTGATCAGACCCTGGACCAGCAGTTTCCAAAAAGGCTCcctgaaagacagaaagaggatgG

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97325 lncRNA upstream 326357 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 400279 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 429428 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 661224 16730837 ~ 16731044 (+) True G72852
TU97233 lncRNA upstream 897693 16494237 ~ 16494575 (+) True G72801
TU97564 lncRNA downstream 24201 17427828 ~ 17463027 (+) True G73027
XR_005639682.1 lncRNA downstream 96962 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 520323 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 711088 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 721367 18124994 ~ 18127318 (+) True G73230
XM_039806677.1 mRNA upstream 229570 17149825 ~ 17162698 (+) False mrpl13
XM_039806676.1 mRNA upstream 229570 17151882 ~ 17162698 (+) True mrpl13
XM_039806667.1 mRNA upstream 262655 17109876 ~ 17129613 (+) True LOC120562784
XM_039806669.1 mRNA upstream 263184 17109876 ~ 17129084 (+) False LOC120562784
XM_039806666.1 mRNA upstream 263184 17110081 ~ 17129084 (+) False LOC120562784
XM_039805008.1 mRNA downstream 31547 17435174 ~ 17436804 (+) True LOC120561781
XM_039805007.1 mRNA downstream 35466 17439093 ~ 17445194 (+) True cdcp1a
XM_039805017.1 mRNA downstream 53016 17456643 ~ 17461118 (+) False ubxn11
XM_039805013.1 mRNA downstream 53018 17456645 ~ 17461118 (+) True ubxn11
XM_039805014.1 mRNA downstream 53018 17456645 ~ 17461118 (+) False ubxn11
unassigned_transcript_351 other upstream 23493 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1320067 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1836316 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 2365615 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2761805 14626478 ~ 14630463 (+) False LOC120561718
TU97574 other downstream 45958 17449585 ~ 17452568 (+) True G73031
XR_005639656.1 other downstream 53016 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 241886 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 347329 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 995429 18399056 ~ 18418232 (+) True kcnn4

Expression Profile