RNA id: TU97564


Basic Information

Item Value
RNA id TU97564
length 395
lncRNA type read_through
GC content 0.53
exon number 2
gene id G73027
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17427828 ~ 17463027 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggggtgggggtGGGGCTCTGAGCTACAGGCAGGCTCGAGAATCAACGTACAGTCAGTCGAGAGAAGTAGAAGCTAAACCATTTGGGCTTTCCTCTGTCCTCGTTTTAAGAAAAATTGCCAGTCCTCTTTCTGACATTCAGTAACTAGTCATGAAAGACAAGCCCATTTTAGATGCTGCAGAGGTGAAGTGGGGCTTTCACAAGGTTCCTCCATCACCTGGTTGGCAGGGTTACTGGGTGATGCAGTTTTCTCCCATGTCCTGCGCGTACCGGTCCAGTATTACGTTGCGTAGTTCCTCAACATCCCGACGGAGCTGTTGcacttcaaccagcttcttctGCAGCACCTCTGGACTCATCCAGTCCTCATCCGGCTCTGCCACTGGTGGGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97549 lncRNA upstream 24201 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 361917 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 435839 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 464988 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 696784 16730837 ~ 16731044 (+) True G72852
XR_005639682.1 lncRNA downstream 37562 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 460923 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 651688 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 661967 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 661967 18124994 ~ 18126954 (+) False G73230
XM_039806677.1 mRNA upstream 265130 17149825 ~ 17162698 (+) False mrpl13
XM_039806676.1 mRNA upstream 265130 17151882 ~ 17162698 (+) True mrpl13
XM_039806667.1 mRNA upstream 298215 17109876 ~ 17129613 (+) True LOC120562784
XM_039806738.1 mRNA downstream 12541 17475568 ~ 17484853 (+) False wdtc1
XM_039806737.1 mRNA downstream 12557 17475584 ~ 17484853 (+) True wdtc1
XM_039806736.1 mRNA downstream 12557 17475584 ~ 17484853 (+) False wdtc1
XM_039806739.1 mRNA downstream 12557 17475584 ~ 17484853 (+) False wdtc1
XM_039805492.1 mRNA downstream 23139 17486166 ~ 17489474 (+) True LOC120562051
unassigned_transcript_351 other upstream 59053 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1355627 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1871876 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 2401175 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2797365 14626478 ~ 14630463 (+) False LOC120561718
TU97725 other downstream 182486 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 287929 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 936029 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 936029 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 952071 18415098 ~ 18420327 (+) False kcnn4

Expression Profile