RNA id: TU97574



Basic Information


Item Value
RNA id TU97574
length 2133
RNA type TUCP
GC content 0.43
exon number 3
gene id G73031
representative True

Chromosome Information


Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17449585 ~ 17452568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ggggtaTCTTTCTTATATCATTTATCATACTTAAGATACTTTTTCACAGTGCAGGgaaattaaaaaacattgaaaataagtCAAAACTCACAGGAACACAGGGTTTGCAAAATCACAATGctcaacacaaaataaatacaactaAATTAAGAAACGAATACAGAAAAAGATACATCTTGAGGTAAAAACATGCAGGAATAAATTAAGTGTGCTTCATGTCTGCAAAAAATACAATGAGTCCTCTTCATCTTGTTGCCATGGTAAACCATCTGAAGCCTCTGCAGCGTGTTGGGCACCGTCCCTCTGGTCTACGTTGGGCAAAGCACTTTAATAACAGTAGAGATGAATATTAGCAGAGTTGAGTGTGCAGGGATGAAGCCTCAGCATGAAGATCAGTACAAATTGCAAAGTAGGagataaagaaaggaaaaacaaatggggaaaaaaaatatcaaaattttGGCACACCCGTTAGTGCTGATGACAAACATATTTCTAAAGTAGGGTGAGTCAGTGAGGATAAATACTTTCACTCTTAGCAGTGCTAGATGACTAATGATCATAAAACTGTGTTTAATGTTAACTGCAGGGTAAATAGTGCTTTAACGTGTATGGCAGTGAGTCACTGTCAGTGAGAGGGATCAACCATGCTGCAGACAGTTACCGTGTGGGAGAGGGGGTGTAAAGTGAAAAGGAAAACATCAGGGTCAGACTGCACTACAATTCAGTGGTAGAGAGGGGGCGCTCTCCCAGTTTGAATGGCCACAACCACAACAGTGCACATCACATGTGAAACAAACCTCTCTTTCCATCGCTCACACCAGAGCTAGTGAGCGCAAGGCAGCGACAAGTTAGATCATAAGAAGTAGAGAAAGAAGACGTGAAAGAATGAAAACAGAACATGTGTAGGACACCAACGAGATCAAAGATAGAGCGCCAATGTTTTAGCAGGAGGCACTGCTATAATACAGACCGTGCAATGCAGTGCCGAATTGTAATAACTGTTCTGAGAGCTCTTCTTGTTCATTGTTGATGCATTTAAAAGACCTGCTCTAAACTGCAATACCAAGCAACGGCAATGTAACTTCACCAAATGTGACTTGATTGTCGATATCAAGAATGTTTcgagatgtttttatttttttagaatgAACTGAAACTCTTGACTGAGATGTAGGAAACAAAATCTAAACAACTACATAATGTGATAAGATGGCCAACAGTAATGTGAAGCATAAATGACTTAGAGTAAATGTAAAACCGCGGCTGTGGTTCTTTAACTTGCGGCAGTCACAATTGATCAGTCATTGATCCTTTGGTTTCTGTGAAACATCATTTACAGTGCAGACACACTACCAACATATCACACCAGCAACTTCtagtgtgttaaaaaaaaagacaaagaaaaaaaaaaaaggagaaaagctCACCTTTGAGAATATAGTCTGTTAAGAGACTGGGCACCTTGTCACTGTCGTCTCTCATAGCTTGTAGGACTGCAAGGCAGCAGAAACAGAGGAGTGAATGGATCAATCACAGTCACTAAAATTCAAGTGCTGCTGGTGCAGATGAAGAAACATACTCTTAGTCAGGATCTGGAGGTCCTCAAGCGACGGAGGGTGTCCCTTTTTCTCATAGGGGATGACTGTGGTCAAATACTGTCTTTCACTGCACCCGCTTCCAAAGGTTTGCCGGAAGCTGTTCTGAATGACAGAGGAGATTCCCTCCATGCTGAAGcgTGATCCGAGCGTCTTCTCCGTGTGGCCCTGCGACGTCCCGGCTCCACCTTtaagcttcttcttcttcttgagcAGCTCTCGGTGCTCCTTCTGTCGGTTCTGTACATCAATGAGCGCTGAGATGAAGCTGTTCTTCACCTCTTTCTCAAAGTCCAGCTCATCCCTGAGAGCCAACTGCTGCACCAGCTCCTCTGAGAACCTCCTGATGATCGTCTCCGTCTCCTCCAGACGTTCATTCAGCTCGGCAACACTCAGGGACCTCACCCCTGgaccacccacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97549 lncRNA upstream 45958 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 383674 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 457596 16991716 ~ 16991989 (+) True G72879
TU97321 lncRNA upstream 486745 16959788 ~ 16962840 (+) True G72859
TU97304 lncRNA upstream 718541 16730837 ~ 16731044 (+) True G72852
XR_005639682.1 lncRNA downstream 48021 17500589 ~ 17504921 (+) True LOC120562054
TU97801 lncRNA downstream 471382 17923950 ~ 17926628 (+) True G73186
TU97833 lncRNA downstream 662147 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 672426 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 672426 18124994 ~ 18126954 (+) False G73230
XM_039805007.1 mRNA upstream 4391 17439093 ~ 17445194 (+) True cdcp1a
XM_039805008.1 mRNA upstream 12781 17435174 ~ 17436804 (+) True LOC120561781
XM_039806677.1 mRNA upstream 286887 17149825 ~ 17162698 (+) False mrpl13
XM_039806676.1 mRNA upstream 286887 17151882 ~ 17162698 (+) True mrpl13
XM_039806667.1 mRNA upstream 319972 17109876 ~ 17129613 (+) True LOC120562784
XM_039805017.1 mRNA downstream 4075 17456643 ~ 17461118 (+) False ubxn11
XM_039805013.1 mRNA downstream 4077 17456645 ~ 17461118 (+) True ubxn11
XM_039805014.1 mRNA downstream 4077 17456645 ~ 17461118 (+) False ubxn11
XM_039805015.1 mRNA downstream 4078 17456646 ~ 17461118 (+) False ubxn11
XM_039805016.1 mRNA downstream 4078 17456646 ~ 17461118 (+) False ubxn11
unassigned_transcript_351 other upstream 80810 17368703 ~ 17368775 (+) True trnar-acg_16
TU97163 other upstream 1377384 16018359 ~ 16072201 (+) True G72750
TU97064 other upstream 1893633 15553464 ~ 15555952 (+) False irx4a
unassigned_transcript_349 other upstream 2422932 15026582 ~ 15026653 (+) True trnae-cuc_16
TU96917 other upstream 2819122 14626478 ~ 14630463 (+) False LOC120561718
XR_005639656.1 other downstream 4075 17456643 ~ 17460327 (+) False ubxn11
TU97725 other downstream 192945 17645513 ~ 17647186 (+) True G73123
TU97779 other downstream 298388 17750956 ~ 17779130 (+) False paqr7b
XR_005639678.1 other downstream 946488 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 946488 18399056 ~ 18416988 (+) False kcnn4

Expression Profile