RNA id: TU97801


Basic Information

Item Value
RNA id TU97801
length 2658
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G73186
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 17923950 ~ 17926628 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcttttaTTGTTGATCGCTGTTATTCTTCAGAACAAACCCCTTTCCCCGACCTCAAAATACATCTGTCTCCTCCGTCTTTCTCTCATTAAATACACACCTTGCCCCCACAAATACAACGGTCATGTCATGTACCATCggtacacacatagacacacatgtgAAATCAACGGTACTCTCAGGGCAGTCGCCGGCGCTCTGAGAGCAGTCATAATAAAAAGCTTTGGAATGGTAAAAATGGTTAAAAGTACAATGCTCATACAGTCGTGGCTGCTGGAAAACAGCGGTTGAATAGATGACGCGGATTGGGATATTCTGAaattaattaaatgaaatacaaaGCAGACAATGTATTCATACATGCTTTGACAGACCTGTTTTACTCAGAGCTCTGGAATGAACACAGGGAGATTCGGCTTATACTCGGCTGTTAAAAGTTCTGCCAATAAACTCACAAAATGGTCATTTACAGCACATTCACTTCCATGGTTATgtagtactgtactgtacgtcTTTACTTTCGGCAAACATATAGTATATTATTCACATAGTATTCACATAACCTAATATACATCTGTATGTACACATTCCTTCCAACATCGAGAAAAAGTGTCCAGGCACTTCCTCCAGTGATCCTGGTTCAGATCGCTGTAGCTACCTCATTCTCCATCCTCCTCAAAAACAAGCTGCTCTATCAGTGAACCTGTGGGAGCCTGGTGATGTTGGTATATTGTTAGATTCCTCACATATTCTGGCACTCCCACCTGAACCAGACTGTGAGCTGCAAACTAGCAGTAGAGTTCGCCTAGCTGCCATTTCTCAGTTTCTGTGGGCTTCAAGGTGTCTCTCCTTGTTTATTAGGGCAGGTCTTGGAGTGATACCTTTACCGCCCTTCTTGAAAACCTGCACTTACAGGATTTTCAGGAGATATGGTGGAGCATAACATATTTTGAAGGGTAATAATGGAGTGTAGAATAGATAATTTCTTGCTTCTCTGACAAAATGTTAAGAAAAATACAAAGAGAATTGCTTCCTGGGTCATTTAAGAGGCTGACTTAGATCCCTATGTGTATCACACATGCTAACCTGCCTGTGTTTCTTCAATTGATTCAGGCATGAACAGTTCCAGTGGTCTCCAGGCATTGGCTGGGCCTGGTCGGTGAAAAACAATGGATTTCATTTATCAGGTTAGTGATATAAACAGCAGGGCGTGGGGGCAATGTTTCTTACTATTCCTCCTATTCCTATTCCtgtttaatttttatttcagGATATTAAAAATGACCTCCATTGTGAAAACACCAATCACCAGCAGTGACACAAAgtagcaattttttttttcctctgcacAATGTTATTgcccctttttatttatttatatttactttatttatttaacaccACTAGGAACAACAACGAATATTTATGTCAGAATTGTCAAAATGAAGCTTCCGACCTGACAGCTGGTTTAGCTTGCTGAGACAGTACAACCAAATGCCTCAGACAACAAAGGAGTAAAAGGAGATACATACTCAAACCTGTAACGCAGCACTGAGTTTAGACACTTCACCACGACATTAATGGAACATCACATGTCAGTACATTTCtaacacccctccccccccttgcTCCTTTTTCTTTCCCGCTGGgtataaaatacaaacaatcaCTTTGGAGCAAGAAGATTAGCTGATGCAGTACATACTGTTTGTTTGTAGGCATATATCAACATGAAGCAGTAGAGCAAAGTAAAGAGAGGAGTCAAGTCAGTCAATGGGATTGGCACTGTGACAGTAATGAGACGGGAATCTTTAGTGGCGGCACCAGGCCCAGTGCTGTGGTCCCTGGCAACGTCCACCTATAGCACACATGGTAATCCAGCACAAACATGgcaaaatacaacacattgcACTACTGTACAGTTTCTGCATCAATACTTCTGAGGACTGGGCTGATCTATCCTAATGCTATAGGTCTCTTGTTAAAATCTCTTGTTGCGGTTTGTACACCAGTATGACAACCTTTCAGATTTATTCAGTGATTCGAATAAATCTGTCCTATCATCAGAGAATAAGGCAGTTTATGGTATGGTAGATAAGTCATGCCACAACCACAGTGGACTGCTGTTGTATGTAGCTCTTGAGAGAGAAGAAAATGCTTCCACGTTTAGATAATTCTGCTGTAACTCTGGAATATTCATCCAGCCCCCTCGCTGTTTGAATGAAACGATGAAACACAGCAAAGGTGACCCTTCTTCAAAATAGACAGGGTCCATTTTGTAGCTCAGACTGTTGTTTTGCTGCTACAGAAACCCTTAGCACAAAAGAGCTTTAGTCCAGAGGCAAAGAGGACcaagaaaagcacaaaaaataTCAAAAGAGATAAACATCACCAACAAGGAGGAAATCACAGCTGTACATTAAAGGTTAAAAGTTAGAACCttgaccatgttttttttttttttctcctctccttccttcgCAGTCCTTTCAATGCCAAACCGTAGGTCCAAACATTAAAGTTGAGGGGGTCACTATGTGGCCTTAAATCGAATCTCCAGTAGATGGTATAGCGCCGCTGTGGTAAACATTTGGTTGCTATCTACCTTCAAAGCAGTCCAAGTACTCCAAAACAAGGTCATAGCAGAATCGATACTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639682.1 lncRNA upstream 419029 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 460923 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 520323 17392268 ~ 17403627 (+) True G73019
TU97325 lncRNA upstream 858039 17065589 ~ 17065911 (+) True G72862
TU97344 lncRNA upstream 931961 16991716 ~ 16991989 (+) True G72879
TU97833 lncRNA downstream 188087 18114715 ~ 18116323 (+) True G73216
TU97857 lncRNA downstream 198366 18124994 ~ 18127318 (+) True G73230
TU97858 lncRNA downstream 198366 18124994 ~ 18126954 (+) False G73230
TU97859 lncRNA downstream 198452 18125080 ~ 18126954 (+) False G73230
TU97860 lncRNA downstream 198452 18125080 ~ 18127318 (+) False G73230
XM_039804754.1 mRNA upstream 168895 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 176924 17741886 ~ 17747026 (+) True stmn1b
XM_039804751.1 mRNA upstream 182570 17739832 ~ 17741380 (+) True LOC120561605
XM_039804793.1 mRNA upstream 300261 17617748 ~ 17623689 (+) True oprd1b
XM_039807047.1 mRNA upstream 330923 17584023 ~ 17593027 (+) True tcea3
XM_039806002.1 mRNA downstream 165675 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA downstream 165676 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039806700.1 mRNA downstream 244201 18170829 ~ 18172243 (+) True LOC120562800
XM_039806696.1 mRNA downstream 383444 18310072 ~ 18311498 (+) True LOC120562798
XM_039805443.1 mRNA downstream 388041 18314669 ~ 18318666 (+) True has1
TU97779 other upstream 144820 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 276764 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 463623 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 471382 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 555175 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 472428 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 472428 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 488470 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 705774 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 705778 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile