RNA id: TU97857


Basic Information

Item Value
RNA id TU97857
length 2325
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G73230
representative True

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18124994 ~ 18127318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccctcttttatttttttctgaaattcaaaataaataatgtttaaatTCAAAGAGCCAAAAACAAGCTCAACATGTCAAGTAAATTCAGTCAGgttaaaataaatagtaaaaaaaaaaatcaatatgttGCGCTCCTTTTGCAGCAAGTGTAtggctatgtttttttttttttttttacacttcctTCTGAAGGCAAATTCATTTTTACACTTGCTCAATGACATAATAAGCCACATCACAAAGCATTTGCAGCACACTGCAGCACAAATAATACTTCAAAAGAATGCTACTGCCAGTGAAAGGCATATTGGAAAAGTTGTAAGGACAGAGGAGATAATACGATTCTTTGATTAGCCTGGTTTTCATACACCAAAAGCACAGTTACATTCTAAATCAGAaagcaaaatgttgaaaaaaccggagggaaaaaaaagagcccTTTGTCGGGCAGTTGATGAATTCCTATTACGTGGATAGACAAGAATACCATCGTTGTAGACTTATGTTCAAATGATCCGTGTCCAGTATCACAGATAAATAGAGGCTGATGATTTGCGGTTATTCTCAATCTAACCTCCAGTATTGAAAACTGATTATTAAAtcaattattgttattttattggatcaattattgaaaacaaaatgtatcacaaaaataaaaataaagggtAAACTCTGTAGTTGGCACTACTCTTTTCCCAAACTCCCTTGATTATGGAAATTCAAAAAGCAGTTGTGGTTGCGCGAGATACAAAGAAAGACACAGCACTTAAGACATAGCACTCGAGATGTTCTCTGACAGTCCCCAAAGCGACACTTGCCCCCTTCTCCCTCCCCAAGTTGCTCTGGCCAGTGGCCTGAACCATCGTACCGTGTGGCTGCATCTGGCAGAGGACTCTCCTCAACCAGGCTGGGATTGGGGGTTTCATTTGTTGCATGAGCCGTATCTTTGGGGGGTTGAGGGGAAACTGAGTCCTGGGTGTCAGAGCCGCTGGAGAGGATCAAAGCCTTGGACACCTCCAATCTGAAGGCCATGAGAGTCAAAGGTGCAGACGCTGCCCCGTGTTCCTGTCTGTGTAGGAGCCAGGAGTTGACCAAAGCCAGATCTGTTAGGTACCAGAGTACCGCTTGAGGCCAGCAGGTTGGGGCCGAGGCAGTGAGAGGGATAGAGTACAGATTCAGCAAATCTCTGTTGAGATGAGCTGACATCTGGGCCATCTCAAAGTTGTCAATGAGTGAAGCCATGTTCCTCTGGCCATGTCCCGCAGTAGAAAGTATGAAGCCACAGTGTGATCTGCGTAACATCAGCTTCCCGTCTGAGCTTACAAACTCATCCCCGATCTGTCCTCGGGCTCCTCCTACCCTTCCTGCACCATGAACCCCAGCAACTAACAAACGCTCGAGCATTGCAGGGGTGGAGAGTTCCTGTTTGCATAGAAACACCATACTACCTTTGGGAACCATTTTTTCTACAGCATCTTCTTTGCCCGACAGACCCAACTTAAGATCCACATGTAAGAGAAAACCACCAAATCCAATTAATGTAGTACAGTTAAGAGACAGTTTCTTATTGTGCATCTTCCCAGTTAAAGGAAGTGGATATTGGTCAACTGCATAATCACCCTCTCGTCTTAGTGACTGGCACCCTGCTTTGAAACGGCACAATAATGGCTGAGCCTTCCACAGGGGATCAGTCTCTGTTTTTGAACTGTTAAGGTCAGTTGGCGTGTCCCCTTGCCTCTGCCTGTCACTGCGCTGACAAATTTCACTTTGCCTGCTTGAAAGAGTTTTACCTTGCTGTGCATTTTGAAAGTCAATATCATATCTTCCTTCCTGAACATTACTGTTGACTGGATCCTTTACAGGAGAGGCAAGCTTCAACATGCGAGACAGCTCGAGGAAACGGGAAAATGGCATGGCGTCAGCAATCAAGGGCACCTTAGTCAAGTCCTCCCAGTAGAGCCTCGGACTGGGAAACTGAAAAATAGCAAGAGACCAAATAAACTTTTAGTGGTCTTGCATGTCACTAACAGAGCCAAGTAAACAAAACGACTCAAAAAACGGAGCACAAACCTTTAAAGTTCCCATTGCAATGTGGATGCCAACAAACCGTGCAACCTCTCTGGCTGTGAAAGGTTTGGCCAAGTTGGATAGTTTATTTGTGCAATGGGCAATTTCTACCCAGGTATCCCAACCAAAATACTTGGAGAAGTAGTCAATGGACTCTCTGGTCCTGTTTTCCTCTCTTGGTGTTTGGAGCTGGCTTGTTGAAGTTGGCAAACTAAGGGagaaaaagacattttttaCCATATTATTCTCCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97833 lncRNA upstream 8671 18114715 ~ 18116323 (+) True G73216
TU97801 lncRNA upstream 198366 17923950 ~ 17926628 (+) True G73186
XR_005639682.1 lncRNA upstream 620073 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 661967 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 721367 17392268 ~ 17403627 (+) True G73019
TU97861 lncRNA downstream 105 18127423 ~ 18127887 (+) True G73231
TU97862 lncRNA downstream 1701 18129019 ~ 18129219 (+) True G73232
TU97863 lncRNA downstream 2734 18130052 ~ 18130318 (+) True G73233
TU97894 lncRNA downstream 75439 18202757 ~ 18211423 (+) True G73254
TU97952 lncRNA downstream 203349 18330667 ~ 18330913 (+) True G73307
XM_039806002.1 mRNA upstream 19245 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 19245 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039804754.1 mRNA upstream 369939 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 377968 17741886 ~ 17747026 (+) True stmn1b
XM_039804751.1 mRNA upstream 383614 17739832 ~ 17741380 (+) True LOC120561605
XM_039806700.1 mRNA downstream 43511 18170829 ~ 18172243 (+) True LOC120562800
XM_039806696.1 mRNA downstream 182754 18310072 ~ 18311498 (+) True LOC120562798
XM_039805443.1 mRNA downstream 187351 18314669 ~ 18318666 (+) True has1
XM_039806719.1 mRNA downstream 260027 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 268089 18395407 ~ 18397717 (+) True si:dkey-79d12.5
TU97779 other upstream 345864 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 477808 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 664667 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 672426 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 756219 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 271738 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 271738 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 287780 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 505084 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 505088 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile