RNA id: TU97859


Basic Information

Item Value
RNA id TU97859
length 1875
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G73230
representative False

Chromosome Information

Item Value
chromosome id NC_053118.1
NCBI id CM020915.1
chromosome length 43092710
location 18124994 ~ 18127318 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCAGgttaaaataaatagtaaaaaaaaaaatcaatatgttGCGCTCCTTTTGCAGCAAGTGTAtggctatgtttttttttttttttttacacttcctTCTGAAGGCAAATTCATTTTTACACTTGCTCAATGACATAATAAGCCACATCACAAAGCATTTGCAGCACACTGCAGCACAAATAATACTTCAAAAGAATGCTACTGCCAGTGAAAGGCATATTGGAAAAGTTGTAAGGACAGAGGAGATAATACGATTCTTTGATTAGCCTGGTTTTCATACACCAAAAGCACAGTTACATTCTAAATCAGAaagcaaaatgttgaaaaaaccggagggaaaaaaaagagcccTTTGTCGGGCAGTTGATGAATTCCTATTACGTGGATAGACAAGAATACCATCGTTGTAGACTTATGTTCAAATGATCCGTGTCCAGTATCACAGATAAATAGAGGCTGATGATTTGCGGTTATTCTCAATCTAACCTCCAGTATTGAAAACTGATTATTAAAtcaattattgttattttattggatcaattattgaaaacaaaatgtatcacaaaaataaaaataaagggtAAACTCTGTAGTTGGCACTACTCTTTTCCCAAACTCCCTTGATTATGGAAATTCAAAAAGCAGTTGTGGTTGCGCGAGATACAAAGAAAGACACAGCACTTAAGACATAGCACTCGAGATGTTCTCTGACAGTCCCCAAAGCGACACTTGCCCCCTTCTCCCTCCCCAAGTTGCTCTGGCCAGTGGCCTGAACCATCGTACCGTGTGGCTGCATCTGGCAGAGGACTCTCCTCAACCAGGCTGGGATTGGGGGTTTCATTTGTTGCATGAGCCGTATCTTTGGGGGGTTGAGGGGAAACTGAGTCCTGGGTGTCAGAGCCGCTGGAGAGGATCAAAGCCTTGGACACCTCCAATCTGAAGGCCATGAGAGTCAAAGGTGCAGACGCTGCCCCGTGTTCCTGTCTGTGTAGGAGCCAGGAGTTGACCAAAGCCAGATCTGTTAGGTACCAGAGTACCGCTTGAGGCCAGCAGGTTGGGGCCGAGGCAGTGAGAGGGATAGAGTACAGATTCAGCAAATCTCTGTTGAGATGAGCTGACATCTGGGCCATCTCAAAGTTGTCAATGAGTGAAGCCATGTTCCTCTGGCCATGTCCCGCAGTAGAAAGTATGAAGCCACAGTGTGATCTGCGTAACATCAGCTTCCCGTCTGAGCTTACAAACTCATCCCCGATCTGTCCTCGGGCTCCTCCTACCCTTCCTGCACCATGAACCCCAGCAACTAACAAACGCTCGAGCATTGCAGGGGTGGAGAGTTCCTGTTTGCATAGAAACACCATACTACCTTTGGGAACCATTTTTTCTACAGCATCTTCTTTGCCCGACAGACCCAACTTAAGATCCACATGTAAGAGAAAACCACCAAATCCAATTAATGTAGTACAGTTAAGAGACAGTTTCTTATTGTGCATCTTCCCAGTTAAAGGAAGTGGATATTGGTCAACTGCATAATCACCCTCTCGTCTTAGTGACTGGCACCCTGCTTTGAAACGGCACAATAATGGCTGAGCCTTCCACAGGGGATCAGTCTCTGTTTTTGAACTGTTAAGGTCAGTTGGCGTGTCCCCTTGCCTCTGCCTGTCACTGCGCTGACAAATTTCACTTTGCCTGCTTGAAAGAGTTTTACCTTGCTGTGCATTTTGAAAGTCAATATCATATCTTCCTTCCTGAACATTACTGTTGACTGGATCCTTTACAGGAGAGGCAAGCTTCAACATGCGAGACAGCTCGAGGAAACGGGAAAATGGCATGGCGTCAGCAATCAAGGGCACCTTAGTCAAGTCCTCCCAGTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97833 lncRNA upstream 8757 18114715 ~ 18116323 (+) True G73216
TU97801 lncRNA upstream 198452 17923950 ~ 17926628 (+) True G73186
XR_005639682.1 lncRNA upstream 620159 17500589 ~ 17504921 (+) True LOC120562054
TU97564 lncRNA upstream 662053 17427828 ~ 17463027 (+) True G73027
TU97549 lncRNA upstream 721453 17392268 ~ 17403627 (+) True G73019
TU97861 lncRNA downstream 469 18127423 ~ 18127887 (+) True G73231
TU97862 lncRNA downstream 2065 18129019 ~ 18129219 (+) True G73232
TU97863 lncRNA downstream 3098 18130052 ~ 18130318 (+) True G73233
TU97894 lncRNA downstream 75803 18202757 ~ 18211423 (+) True G73254
TU97952 lncRNA downstream 203713 18330667 ~ 18330913 (+) True G73307
XM_039806002.1 mRNA upstream 19331 18092303 ~ 18105749 (+) True si:dkey-34d22.1
XM_039806003.1 mRNA upstream 19331 18092304 ~ 18105749 (+) False si:dkey-34d22.1
XM_039804754.1 mRNA upstream 370025 17750930 ~ 17755055 (+) True paqr7b
XM_039804753.1 mRNA upstream 378054 17741886 ~ 17747026 (+) True stmn1b
XM_039804751.1 mRNA upstream 383700 17739832 ~ 17741380 (+) True LOC120561605
XM_039806700.1 mRNA downstream 43875 18170829 ~ 18172243 (+) True LOC120562800
XM_039806696.1 mRNA downstream 183118 18310072 ~ 18311498 (+) True LOC120562798
XM_039805443.1 mRNA downstream 187715 18314669 ~ 18318666 (+) True has1
XM_039806719.1 mRNA downstream 260391 18387345 ~ 18388459 (+) True LOC120562815
XM_039806718.1 mRNA downstream 268453 18395407 ~ 18397717 (+) True si:dkey-79d12.5
TU97779 other upstream 345950 17750956 ~ 17779130 (+) False paqr7b
TU97725 other upstream 477894 17645513 ~ 17647186 (+) True G73123
XR_005639656.1 other upstream 664753 17456643 ~ 17460327 (+) False ubxn11
TU97574 other upstream 672512 17449585 ~ 17452568 (+) True G73031
unassigned_transcript_351 other upstream 756305 17368703 ~ 17368775 (+) True trnar-acg_16
XR_005639678.1 other downstream 272102 18399056 ~ 18418232 (+) True kcnn4
XR_005639679.1 other downstream 272102 18399056 ~ 18416988 (+) False kcnn4
TU97972 other downstream 288144 18415098 ~ 18420327 (+) False kcnn4
XR_005639844.1 other downstream 505448 18632402 ~ 18637307 (+) True LOC120562796
XR_005639845.1 other downstream 505452 18632406 ~ 18637307 (+) False LOC120562796

Expression Profile